AT3G17030.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Nucleic acid-binding proteins superfamily | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Nucleic acid-binding proteins superfamily; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027); Has 37 Blast hits to 37 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 31; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5804509..5808462 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 74170.70 Da | ||||||||||||||||||||||||
| IEP (calculated) | 4.55 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||
| Length | 668 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDTNGASLI EIGDQEEVED PFLAFLDYAR TVISPEDDED EKEESKRGPG EAMTEASGPG WGWVASRILK TCTAYSSGVT AAILLSDLSQ AWHEQNKPGM 101: SKKKPELIDQ LKKGHRRRRL ANTVTIDSIY EKNFLSMNSV LEAVIINADV LPGTNIFMLT LGDFWSSNTI DLYLHRRYYE LVETPNGILR KGREVLITGC 201: YLRTAREGFG TPRLLPTEYL VVLLDEDQDD DAILIAAQFC SDTFSSVSLD AFNDGASYSL YARIESIGPL ESELTFSTAR RRQISLVDGD GDRLKFILWG 301: EQVIVANLLS VGSVLGIERP YISSLEESAM EGNYEFCLEY GSATHLYLVP STLQEERVCV ALSQHQCQGS KLLGSVGVSQ VTLPRDADGS VDFSNYPFRT 401: MITDIRDKTT GISLYGVVTD ISCDPNATGV VFSLKIEDTT GAIWAKLHFT NYWSLGRLGL GHVVYVSGLS CKITKENCIE MLWHEKDEKA TFVNLSCLPA 501: FLTSSCIHLI STLSQISKQR KPAINICRVK LDEIDQCHNI NTRLAHSLCG HFIDEESSSS YGANLHCSFC RVSCNSNTEV VRTFHITITL ADEETKLYAW 601: CTGQSASAIL QISPDEFCDL PEDDQLMYPS SLENEWFLVI LANSGSRNLG SGHETDDTCW EITRALKI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)