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AT3G17010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary.
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: VERDANDI (TAIR:AT5G18000.1); Has 398 Blast hits to 368 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
DNASU:820957eggNOG:ENOG410JESDeggNOG:ENOG410Z9I2EMBL:AB026636EMBL:AB493618EMBL:CP002686EnsemblPlants:AT3G17010
EnsemblPlants:AT3G17010.1entrez:820957Gene3D:2.40.330.10GeneID:820957Genevisible:Q9LSP6GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT3G17010.1hmmpanther:PTHR31920hmmpanther:PTHR31920:SF20HOGENOM:HOG000131629InParanoid:Q9LSP6
InterPro:IPR003340InterPro:IPR015300iPTMnet:Q9LSP6KEGG:ath:AT3G17010OMA:KFLAIPKPaxDb:Q9LSP6Pfam:PF02362
Pfam:Q9LSP6Pfscan:PS50863PhylomeDB:Q9LSP6PRIDE:Q9LSP6PRO:PR:Q9LSP6PROSITE:PS50863ProteinModelPortal:Q9LSP6
Proteomes:UP000006548RefSeq:NP_188326.1SMART:SM01019STRING:3702.AT3G17010.1SUPFAM:SSF101936TAIR:AT3G17010UniGene:At.38804
UniProt:Q9LSP6
Coordinates (TAIR10) chr3:+:5800460..5802303
Molecular Weight (calculated) 35288.90 Da
IEP (calculated) 10.38
GRAVY (calculated) -0.65
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKSSNIVFD RIKEERQMLS FFKIFQRADL SSDCMRALPY SFISKVSEKD FSYKMVIRAQ WGKTWDVEVS KNPTYYYIET RGWDLFVSDN ALGQNEFITF
101: THRGNMVFHV NIYEQNGLEM RKPRKFQTMG PSSGIKKEEG ENSLIDVKKE EESDESPGRA EFLVRKKKTE DSKSSKKKMT RNKVKKKSKS KSKQVLDGVP
201: EFKITIRKSY LKFLAIPKHF VDDHIPNKSK IFTIRHPNGG SWKVLCLVRE IRTIFSGGYS KLAREFPLMV GDKCTFKLIK PFEFVLLTSK KNREKMDQCM
301: ID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)