AT3G17010.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : AP2/B3-like transcriptional factor family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
transcriptional factor B3 family protein, contains Pfam profile PF02362: B3 DNA binding domain. Activated by AGAMOUS ina a cal-1, ap1-1 background. Expressed in stamen primordia, the placental region of developing carpels and the ovary. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AP2/B3-like transcriptional factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: VERDANDI (TAIR:AT5G18000.1); Has 398 Blast hits to 368 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 13; Fungi - 0; Plants - 378; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5800460..5802303 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 35288.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.38 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 302 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKSSNIVFD RIKEERQMLS FFKIFQRADL SSDCMRALPY SFISKVSEKD FSYKMVIRAQ WGKTWDVEVS KNPTYYYIET RGWDLFVSDN ALGQNEFITF 101: THRGNMVFHV NIYEQNGLEM RKPRKFQTMG PSSGIKKEEG ENSLIDVKKE EESDESPGRA EFLVRKKKTE DSKSSKKKMT RNKVKKKSKS KSKQVLDGVP 201: EFKITIRKSY LKFLAIPKHF VDDHIPNKSK IFTIRHPNGG SWKVLCLVRE IRTIFSGGYS KLAREFPLMV GDKCTFKLIK PFEFVLLTSK KNREKMDQCM 301: ID |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)