AT3G16920.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.837 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : chitinase-like protein 2 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a chitinase-like protein expressed predominantly in stems. Mutants accumulate ligning in etiolated hypocotyls. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
chitinase-like protein 2 (CTL2); FUNCTIONS IN: chitinase activity; INVOLVED IN: lignin biosynthetic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 4 anthesis, LP.10 ten leaves visible, C globular stage, petal differentiation and expansion stage, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT1G05850.1); Has 1961 Blast hits to 1960 proteins in 411 species: Archae - 0; Bacteria - 465; Metazoa - 25; Fungi - 3; Plants - 1425; Viruses - 0; Other Eukaryotes - 43 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5776663..5777886 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 38448.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 348 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVTLIDEEKD KKKSTMVSKP LFSLLLLTVA LVVFQTGTLV NAEDSEPSSS TRKPLVKIVK GKKLCDKGWE CKGWSEYCCN HTISDFFETY QFENLFSKRN 101: SPVAHAVGFW DYRSFITAAA EYQPLGFGTA GEKLQGMKEV AAFLGHVGSK TSCGYGVATG GPLAWGLCYN KEMSPDQLYC DDYYKLTYPC TPGVSYHGRG 201: ALPVYWNYNY GQTGEALKVD LLSHPEYLEN NATLAFQAAI WRWMTPPKKH LPSAHDVFVG KWKPTKNDTA AKRTPGFGAT INVLYGDQIC NSGFDNDEMN 301: NIVSHYLYYL DLIGVGREEA GPHEKLSCAD QEPFSSSSSA PPSSGSSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)