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AT3G16840.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), RNA helicase, DEAD-box type, Q motif (InterPro:IPR014014), RNA helicase, ATP-dependent, DEAD-box, conserved site (InterPro:IPR000629), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: DEA(D/H)-box RNA helicase family protein (TAIR:AT5G60990.1); Has 60083 Blast hits to 51461 proteins in 3186 species: Archae - 589; Bacteria - 20345; Metazoa - 13239; Fungi - 7387; Plants - 3446; Viruses - 273; Other Eukaryotes - 14804 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-694-MONOMERBioGrid:6271EC:3.6.4.13eggNOG:ENOG410XS03eggNOG:KOG0347EMBL:AB028608EMBL:AJ010465
EMBL:AK318706EMBL:AY045669EMBL:AY054475EMBL:CP002686EnsemblPlants:AT3G16840EnsemblPlants:AT3G16840.1entrez:820937
Gene3D:3.40.50.300GeneID:820937Genevisible:Q93Y39GO:GO:0003723GO:GO:0004386GO:GO:0005524Gramene:AT3G16840.1
hmmpanther:PTHR24031hmmpanther:PTHR24031:SF91HOGENOM:HOG000290702InParanoid:Q93Y39InterPro:IPR000629InterPro:IPR001650InterPro:IPR011545
InterPro:IPR014001InterPro:IPR014014InterPro:IPR027417iPTMnet:Q93Y39KEGG:ath:AT3G16840KO:K14805ncoils:Coil
OMA:IIDMLPVPaxDb:Q93Y39Pfam:PF00270Pfam:PF00271Pfam:Q93Y39Pfscan:PS51192Pfscan:PS51194
Pfscan:PS51195PIR:T51744PRIDE:Q93Y39PRO:PR:Q93Y39PROSITE:PS00039PROSITE:PS51192PROSITE:PS51194
PROSITE:PS51195ProteinModelPortal:Q93Y39Proteomes:UP000006548RefSeq:NP_188307.3scanprosite:PS00039SMART:SM00487SMART:SM00490
SMR:Q93Y39STRING:3702.AT3G16840.1SUPFAM:SSF52540TAIR:AT3G16840UniGene:At.5723UniProt:Q93Y39
Coordinates (TAIR10) chr3:-:5738020..5743042
Molecular Weight (calculated) 93991.30 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.73
Length 826 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTGDKESSL MKKRNKRSHK RKREEDFERI DSLPWSSSIP IGEDDEGESF STLFSGSGQL DGGFLSLEEI DEADYHLTLP TIESEITERK QSPEDDDDTN
101: ETVDEMIEGE EAEEDGEGRD DEDDEDDEET RKKKEKKAKR NKEKKKEKKK KKQKKINEAA KNQDASAVSC DGDDTVEEQV EEEEIPPEFS AWSSMRLHPL
201: LMKSIYRLDF KEPTKIQKAC FNVAAYQGKD VIGAAETGSG KTLAFGLPIL QRLLDEREKV GKLYALKGEE AQKYAADGYL RALIITPTRE LALQVTEHLE
301: NAAKNLSVKV VPIVGGMFSE KQERRLKEKP EIVVATPGRL WELMSAGEKH LVELHSLSFF VLDEADRMVE RGHFRELQSI LDLLPVTDKP NEGKTQTVKS
401: NDTVLNVPKK KRQTFVFSAT IALSSDFRKK LKRGSSKSKQ SSSGEVNSIE VLSERAGMRD NVAIIDLTTT SILAPKIEES FIKCEEKEKD AYLYYILSVH
501: GQGRTIVFCT SVTDLRHISG LLKILGLDVC TLFSEMKQRA RLKSIDRFRA SENGILIATD LVARGIDIKN VRTIIHYKLP HSAEVYVHRC GRTARAFADG
601: CSIALIEPNE TSKFYTLCKS FSMESVKIFP LDNSYMPAVR KRLYLARQIY EIERKGSREN ADRTWLKKHA ESMELELDDE ESEEERVDNV RQRKATSARL
701: NKLKEELSTL LSHPMQPKKF SGRYFAGVGV STLMQNQFVE LKKQKQAQMQ IGGDIKRRKL VVINQNCIEP LQALRAGGNE MLKMKGQSAE KRRDIASLKK
801: KRKEEKIGRR DQRRNQKKQR KLMASS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)