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AT3G16650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.992
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: pleiotropic regulatory locus 1 (TAIR:AT4G15900.1); Has 78035 Blast hits to 32558 proteins in 858 species: Archae - 78; Bacteria - 9289; Metazoa - 31871; Fungi - 16785; Plants - 9585; Viruses - 0; Other Eukaryotes - 10427 (source: NCBI BLink).
Protein Annotations
BioGrid:6251eggNOG:ENOG410XQV9eggNOG:KOG0285EMBL:AB022217
EMBL:AY054181EMBL:BT020378EMBL:CP002686EMBL:X82826
EnsemblPlants:AT3G16650EnsemblPlants:AT3G16650.1entrez:820917Gene3D:2.130.10.10
GeneID:820917Genevisible:Q39190GO:GO:0000398GO:GO:0000974
GO:GO:0071011GO:GO:0071013GO:GO:0080008Gramene:AT3G16650.1
hmmpanther:PTHR19923hmmpanther:PTHR19923:SF0HOGENOM:HOG000207595InParanoid:Q39190
IntAct:Q39190InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:IPR019775InterPro:IPR020472iPTMnet:Q39190KEGG:ath:AT3G16650
OMA:MPSRWPRPaxDb:Q39190Pfam:PF00400Pfam:Q39190
Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q39190PRIDE:Q39190
PRINTS:PR00320PRO:PR:Q39190PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:Q39190Proteomes:UP000006548Reactome:R-ATH-72163
RefSeq:NP_566557.1scanprosite:PS00678SMART:SM00320SMR:Q39190
STRING:3702.AT3G16650.1SUPFAM:SSF50978TAIR:AT3G16650UniGene:At.104
UniProt:Q39190
Coordinates (TAIR10) chr3:+:5671133..5675106
Molecular Weight (calculated) 53571.20 Da
IEP (calculated) 9.79
GRAVY (calculated) -0.46
Length 479 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMIALNREV ETQSLKKLSL KSVRRAREIF SPVHGQFPQP DPESKRIRLC HKIQVAFGGV EPASKPTRIA DHNSEKTAPL KALALPGPKG SKELRKSATE
101: KALVVGPTLP PRDLNNTGNP GKSTAILPAP GSFSERNLST AALMERMPSR WPRPEWHAPW KNYRVLQGHL GWVRSVAFDP SNEWFCTGSA DRTIKIWDVA
201: TGVLKLTLTG HIGQVRGLAV SNRHTYMFSA GDDKQVKCWD LEQNKVIRSY HGHLHGVYCL ALHPTLDVVL TGGRDSVCRV WDIRTKMQIF VLPHDSDVFS
301: VLARPTDPQV ITGSHDSTIK FWDLRYGKSM ATITNHKKTV RAMALHPKEN DFVSASADNI KKFSLPKGEF CHNMLSLQRD IINAVAVNED GVMVTGGDKG
401: GLWFWDWKSG HNFQRAETIV QPGSLESEAG IYAACYDQTG SRLVTCEGDK TIKMWKEDED ATPETHPLNF KPPKEIRRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)