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AT3G16640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : translationally controlled tumor protein
Curator
Summary (TAIR10)
Encodes a protein homologous to translationally controlled tumor protein (TCTP) from Drosophila. In flies, TCTP functions guanine nucleotide exchange factor in the TOR signaling pathway. TCTP is expressed throughout the plant with highest levels seen in meristematic regions of the shoot and root. Loss of function alleles are not transmitted through the male gametophyte due to defects in pollen tube growth. Hypomorphs, generated through RNAi, are dwarf and have smaller cells. These plants also have defects in lateral and primary root growth as well as root hair growth. The phenotypes are similar to TOR mutants suggesting that TCTP functions in the is pathway in Arabidopsis as well.
Computational
Description (TAIR10)
translationally controlled tumor protein (TCTP); INVOLVED IN: in 8 processes; LOCATED IN: in 6 components; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: Translationally controlled tumour protein (InterPro:IPR018105), Mss4/translationally controlled tumour-associated TCTP (InterPro:IPR011323), Translationally controlled tumour protein, conserved site (InterPro:IPR018103), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: Methionine sulfoxide reductase (MSS4-like) family protein (TAIR:AT3G05540.1); Has 867 Blast hits to 867 proteins in 310 species: Archae - 0; Bacteria - 0; Metazoa - 452; Fungi - 160; Plants - 158; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Protein Annotations
BioGrid:6250eggNOG:ENOG4111FVPeggNOG:KOG1727EMBL:AB022217EMBL:AF215897EMBL:AF361815EMBL:AY045802
EMBL:AY056065EMBL:AY072337EMBL:AY079333EMBL:AY088605EMBL:AY114601EMBL:CP002686EMBL:Z18387
EnsemblPlants:AT3G16640EnsemblPlants:AT3G16640.1entrez:820916Gene3D:2.170.150.10GeneID:820916Genevisible:P31265GO:GO:0001558
GO:GO:0005634GO:GO:0005774GO:GO:0005794GO:GO:0005829GO:GO:0005886GO:GO:0007346GO:GO:0008017
GO:GO:0008283GO:GO:0009506GO:GO:0009507GO:GO:0009579GO:GO:0009735GO:GO:0009791GO:GO:0009793
GO:GO:0009819GO:GO:0009860GO:GO:0010252GO:GO:0031117GO:GO:0040014GO:GO:0042742GO:GO:0046686
GO:GO:0048046GO:GO:0048364GO:GO:0048527GO:GO:0048768GO:GO:0090333GO:GO:0090406Gramene:AT3G16640.1
HOGENOM:HOG000203361InParanoid:P31265IntAct:P31265InterPro:IPR011057InterPro:IPR011323InterPro:IPR018103InterPro:IPR018105
KEGG:ath:AT3G16640OMA:WADGLKEPaxDb:P31265Pfam:P31265Pfam:PF00838PhylomeDB:P31265PRIDE:P31265
PRINTS:PR01653PRO:PR:P31265PROSITE:PS01002PROSITE:PS01003ProteinModelPortal:P31265Proteomes:UP000006548RefSeq:NP_188286.1
scanprosite:PS01002scanprosite:PS01003SMR:P31265STRING:3702.AT3G16640.1SUPFAM:SSF51316TAIR:AT3G16640tair10-symbols:TCTP
UniGene:At.34389UniGene:At.47256UniGene:At.74193UniProt:P31265
Coordinates (TAIR10) chr3:-:5669709..5670729
Molecular Weight (calculated) 18911.30 Da
IEP (calculated) 4.26
GRAVY (calculated) -0.29
Length 168 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVYQDLLTG DELLSDSFPY KEIENGILWE VEGKWVTVGA VDVNIGANPS AEEGGEDEGV DDSTQKVVDI VDTFRLQEQP TYDKKGFIAY IKKYIKLLTP
101: KLSEEDQAVF KKGIEGATKF LLPRLSDFQF FVGEGMHDDS TLVFAYYKEG STNPTFLYFA HGLKEVKC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)