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AT3G16560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.871
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein phosphatase 2C family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein phosphatase 2C family protein; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: pol-like 5 (TAIR:AT1G07630.1); Has 5306 Blast hits to 5268 proteins in 332 species: Archae - 0; Bacteria - 114; Metazoa - 1381; Fungi - 595; Plants - 2295; Viruses - 5; Other Eukaryotes - 916 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G16560-MONOMEREC:3.1.3.16eggNOG:COG0631eggNOG:KOG0700
EMBL:AB022217EMBL:AY086406EMBL:AY136458EMBL:BT008864
EMBL:CP002686EnsemblPlants:AT3G16560EnsemblPlants:AT3G16560.1entrez:820905
Gene3D:3.60.40.10GeneID:820905Genevisible:Q9LUS8GO:GO:0004722
GO:GO:0046872Gramene:AT3G16560.1hmmpanther:PTHR13832hmmpanther:PTHR13832:SF309
HOGENOM:HOG000240776InParanoid:Q9LUS8InterPro:IPR001932InterPro:IPR015655
iPTMnet:Q9LUS8KEGG:ath:AT3G16560OMA:TIMVITLPANTHER:PTHR13832
PaxDb:Q9LUS8Pfam:PF00481Pfam:Q9LUS8Pfscan:PS51746
PhylomeDB:Q9LUS8PRIDE:Q9LUS8PRO:PR:Q9LUS8PROSITE:PS51746
ProteinModelPortal:Q9LUS8Proteomes:UP000006548RefSeq:NP_566554.1SMART:SM00332
SMR:Q9LUS8STRING:3702.AT3G16560.1SUPFAM:SSF81606TAIR:AT3G16560
UniGene:At.38878UniProt:Q9LUS8
Coordinates (TAIR10) chr3:-:5636051..5637702
Molecular Weight (calculated) 53616.80 Da
IEP (calculated) 4.76
GRAVY (calculated) -0.13
Length 493 amino acids
Sequence (TAIR10)
(BLAST)
001: MQEGTDPYGE IEISFGYQCN NKKIGIPEDK IADGREVLGG FRLQKTSSFS CLSGAALSGN PTLANTNICN GVIGSEILPS LDSPKSFRKV PSSPALSKLD
101: ILSPSLHGSM VSLSCSSSTS PSPPEPESCY LTSMSSPSSV NEGFLLSAME VQVAGGAAGE DRVQAVCSEE NGWLFCAIYD GFNGRDAADF LACTLYESIV
201: FHLQLLDRQM KQTKSDDDGE KLELLSNISN VDYSSTDLFR QGVLDCLNRA LFQAETDFLR MVEQEMEERP DLVSVGSCVL VTLLVGKDLY VLNLGDSRAV
301: LATYNGNKKL QAVQLTEDHT VDNEVEEARL LSEHLDDPKI VIGGKIKGKL KVTRALGVGY LKKEKLNDAL MGILRVRNLL SPPYVSVEPS MRVHKITESD
401: HFVIVASDGL FDFFSNEEAI GLVHSFVSSN PSGDPAKFLL ERLVAKAAAR AGFTLEELTN VPAGRRRRYH DDVTIMVITL GTDQRTSKAS TFV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)