suba logo
AT3G16540.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g16540-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g16540-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz

onion epidermal cell layer (plastidal marker)

At3g16540-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DegP protease 11
Curator
Summary (TAIR10)
Encodes a putative DegP protease.
Computational
Description (TAIR10)
DegP protease 11 (DegP11); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 12 (TAIR:AT3G16550.1); Has 9343 Blast hits to 9333 proteins in 2192 species: Archae - 85; Bacteria - 6893; Metazoa - 266; Fungi - 0; Plants - 274; Viruses - 2; Other Eukaryotes - 1823 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:COG0265eggNOG:KOG1320EMBL:AP000373EMBL:CP002686EnsemblPlants:AT3G16540EnsemblPlants:AT3G16540.1
entrez:820902Gene3D:2.30.42.10GeneID:820902Genevisible:Q9LK71GO:GO:0004252GO:GO:0031966Gramene:AT3G16540.1
hmmpanther:PTHR22939hmmpanther:PTHR22939:SF87HOGENOM:HOG000239474InParanoid:Q9LK71InterPro:IPR001478InterPro:IPR001940InterPro:IPR009003
KEGG:ath:AT3G16540MEROPS:S01.A01PaxDb:Q9LK71Pfam:PF13180Pfam:PF13365Pfam:Q9LK71PRIDE:Q9LK71
PRINTS:PR00834PRO:PR:Q9LK71ProteinModelPortal:Q9LK71Proteomes:UP000006548RefSeq:NP_566551.1SMR:Q9LK71STRING:3702.AT3G16540.1
SUPFAM:SSF50156SUPFAM:SSF50494TAIR:AT3G16540tair10-symbols:DegP11UniGene:At.53334UniProt:Q9LK71
Coordinates (TAIR10) chr3:-:5626290..5628857
Molecular Weight (calculated) 63142.30 Da
IEP (calculated) 8.61
GRAVY (calculated) -0.24
Length 555 amino acids
Sequence (TAIR10)
(BLAST)
001: MFFRPCVHTV GRYSRARVPG LLSSLFFYRS CNNVLTNSLP TVTTAGRVSR YGYICRRSST SAAERGVFLP FALTCRRNIH SIHEDEKKLE RWKKIEESHP
101: LDELVLDSVV KVFSNSTEYS KSKPWKTLDQ KSSRGTGFAI AGRKILTNAH VVMAMNDHTF VDVKRHGSQI KYKAKVQKIS HECDLAILEI DSDEFWKGMN
201: PLELGDIPPL QEVVSVVGGE NICITKGLVL RVETRIYDYS DSDLLSIQID ATINDENSGG PVIMGNKVVG VVYEIGFVIP TPIIKHFITS VQESRQYSCF
301: GSLDLSYQSL ENVQIRNHFK MSHEMTGILI NKINSSSGAY KILRKDDIIL AIDGVPIGND EKVPFQNKRR IDFSYLVSMK KPGEKALVKV LRNGKEYEYN
401: ISLKPVKPNF TVQQFYNVPS YYIFGGFVFV PLTKTYLDSE HHQRLADDIN EGYQSLYGAQ VEKVNGVEVK NLKHLCELIE ECSTEDLRLE FKNHKVLVLN
501: YESAKKATLQ ILERHKIKSV ISKDICLPML LDDPFKDNKI NLLPWSVLPL MFDFS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)