AT3G16540.1
|
Subcellular Consensus
(Prediction and Experimental)  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? What is ASURE? SUBAcon computations |
|
||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||
| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
onion epidermal cell layer (plastidal marker)
|
||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : DegP protease 11 | ||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative DegP protease. | ||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DegP protease 11 (DegP11); FUNCTIONS IN: serine-type peptidase activity, catalytic activity, serine-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast thylakoid membrane; CONTAINS InterPro DOMAIN/s: Serine endopeptidase DegP2 (InterPro:IPR015724), Serine/cysteine peptidase, trypsin-like (InterPro:IPR009003), Peptidase S1C, HrtA/DegP2/Q/S (InterPro:IPR001940), Peptidase S1/S6, chymotrypsin/Hap (InterPro:IPR001254), PDZ/DHR/GLGF (InterPro:IPR001478); BEST Arabidopsis thaliana protein match is: DEGP protease 12 (TAIR:AT3G16550.1); Has 9343 Blast hits to 9333 proteins in 2192 species: Archae - 85; Bacteria - 6893; Metazoa - 266; Fungi - 0; Plants - 274; Viruses - 2; Other Eukaryotes - 1823 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:5626290..5628857 | ||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63142.30 Da | ||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.61 | ||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||
| Length | 555 amino acids | ||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFFRPCVHTV GRYSRARVPG LLSSLFFYRS CNNVLTNSLP TVTTAGRVSR YGYICRRSST SAAERGVFLP FALTCRRNIH SIHEDEKKLE RWKKIEESHP 101: LDELVLDSVV KVFSNSTEYS KSKPWKTLDQ KSSRGTGFAI AGRKILTNAH VVMAMNDHTF VDVKRHGSQI KYKAKVQKIS HECDLAILEI DSDEFWKGMN 201: PLELGDIPPL QEVVSVVGGE NICITKGLVL RVETRIYDYS DSDLLSIQID ATINDENSGG PVIMGNKVVG VVYEIGFVIP TPIIKHFITS VQESRQYSCF 301: GSLDLSYQSL ENVQIRNHFK MSHEMTGILI NKINSSSGAY KILRKDDIIL AIDGVPIGND EKVPFQNKRR IDFSYLVSMK KPGEKALVKV LRNGKEYEYN 401: ISLKPVKPNF TVQQFYNVPS YYIFGGFVFV PLTKTYLDSE HHQRLADDIN EGYQSLYGAQ VEKVNGVEVK NLKHLCELIE ECSTEDLRLE FKNHKVLVLN 501: YESAKKATLQ ILERHKIKSV ISKDICLPML LDDPFKDNKI NLLPWSVLPL MFDFS |
||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)