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AT3G16500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : phytochrome-associated protein 1
Curator
Summary (TAIR10)
phytochrome-associated protein 1 (PAP1)
Computational
Description (TAIR10)
phytochrome-associated protein 1 (PAP1); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to auxin stimulus; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aux/IAA-ARF-dimerisation (InterPro:IPR011525), AUX/IAA protein (InterPro:IPR003311); BEST Arabidopsis thaliana protein match is: indole-3-acetic acid inducible 18 (TAIR:AT1G51950.1); Has 1982 Blast hits to 1978 proteins in 81 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1982; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6232eggNOG:ENOG410INWJeggNOG:ENOG410YI31EMBL:AF088281EMBL:AF332394EMBL:AF332401EMBL:AF386948
EMBL:AP000373EMBL:AY072502EMBL:AY087745EMBL:CP002686EnsemblPlants:AT3G16500EnsemblPlants:AT3G16500.1entrez:820898
GeneID:820898Genevisible:Q8LAL2GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009733GO:GO:0009734
Gramene:AT3G16500.1hmmpanther:PTHR31734hmmpanther:PTHR31734:SF2HOGENOM:HOG000238261InParanoid:Q8LAL2IntAct:Q8LAL2InterPro:IPR000270
InterPro:IPR003311InterPro:IPR033389KEGG:ath:AT3G16500KO:K14484OMA:AYNSYEQPANTHER:PTHR31734PaxDb:Q8LAL2
Pfam:PF02309Pfam:Q8LAL2Pfscan:PS51745PhylomeDB:Q8LAL2PRIDE:Q8LAL2PRO:PR:Q8LAL2PROSITE:PS51745
ProteinModelPortal:Q8LAL2Proteomes:UP000006548RefSeq:NP_188271.1SMR:Q8LAL2STRING:3702.AT3G16500.1SUPFAM:SSF54277TAIR:AT3G16500
tair10-symbols:IAA26tair10-symbols:PAP1UniGene:At.16067UniGene:At.20072UniProt:Q8LAL2
Coordinates (TAIR10) chr3:-:5612801..5614208
Molecular Weight (calculated) 30125.70 Da
IEP (calculated) 8.78
GRAVY (calculated) -0.84
Length 269 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGCPRNREI GPKLLDLIPQ GRKWYQEDKN NTDQEKKLEL RLGPPGGDEE DHSAIKKKNT EIRNIKKETE DKSFHCFNGN HFSPSNKTTS VPHISQKRTA
101: PGPVVGWPPV RSFRKNLAST SSSKLGNESS HGGQINKSDD GEKQVETKKE GMFVKINMDG VPIGRKVDLN AYNSYEQLSF VVDKLFRGLL AAQRDISDGQ
201: GEEKPIIGLL DGKGEFTLTY EDNEGDKMLV GDVPWQMFVS SVKRLRVIKS SEISSALTFG CSKQEKMMH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)