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AT3G16490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.979
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 26
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 26 (IQD26); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 27 (TAIR:AT1G51960.1); Has 778 Blast hits to 763 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 10; Plants - 755; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II9BeggNOG:ENOG410YC0ZEMBL:AP000373EMBL:BT015939EMBL:BT020577EMBL:CP002686EnsemblPlants:AT3G16490
EnsemblPlants:AT3G16490.1entrez:820897GeneID:820897Gramene:AT3G16490.1hmmpanther:PTHR32295hmmpanther:PTHR32295:SF10HOGENOM:HOG000238265
InterPro:IPR000048InterPro:IPR025064InterPro:IPR027417KEGG:ath:AT3G16490OMA:CGDDFIYPfam:PF00612Pfam:PF13178
Pfscan:PS50096PhylomeDB:Q9LK76PROSITE:PS50096Proteomes:UP000006548RefSeq:NP_188270.1SMART:SM00015STRING:3702.AT3G16490.1
SUPFAM:SSF52540TAIR:AT3G16490tair10-symbols:IQD26UniGene:At.38890UniProt:Q9LK76
Coordinates (TAIR10) chr3:-:5603962..5605489
Molecular Weight (calculated) 43662.70 Da
IEP (calculated) 10.65
GRAVY (calculated) -0.71
Length 389 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAARWFKG IFGMKKSKEK ENCVSGDVGG EAGGSNIHRK VLQADSVWLR TYLAETDKEQ NKHAIAVAAA TAAAADAAVA AAQAAVAVVR LTSNGRSGGY
101: SGNAMERWAA VKIQSVFKGY LARKALRALK GLVKLQALVR GYLVRKRAAE TLHSMQALIR AQTSVRSQRI NRNNMFHPRH SLERLDDSRS EIHSKRISIS
201: VEKQSNHNNN AYDETSPKIV EIDTYKTKSR SKRMNVAVSE CGDDFIYQAK DFEWSFPGEK CKFPTAQNTP RFSSSMANNN YYYTPPSPAK SVCRDACFRP
301: SYPGLMTPSY MANTQSFKAK VRSHSAPRQR PDRKRLSLDE IMAARSSVSG VRMVQPQPQP QTQTQQQKRS PCSYDHQFRQ NETDFRFYN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)