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AT3G16370.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:25852701 (2015): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: apoplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G22810.1); Has 3678 Blast hits to 3640 proteins in 303 species: Archae - 0; Bacteria - 507; Metazoa - 0; Fungi - 26; Plants - 3124; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G16370-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IHDAEMBL:AB023046EMBL:AC001645EMBL:AY075698
EMBL:BT002609EMBL:CP002686EMBL:Z26539EnsemblPlants:AT3G16370EnsemblPlants:AT3G16370.1entrez:820884Gene3D:3.40.50.1110
GeneID:820884Genevisible:Q9LU14GO:GO:0016042GO:GO:0016788GO:GO:0048046Gramene:AT3G16370.1hmmpanther:PTHR22835
hmmpanther:PTHR22835:SF170HOGENOM:HOG000237650IntAct:Q9LU14InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT3G16370ncoils:Coil
OMA:NDYLHTIPaxDb:Q9LU14Pfam:PF00657Pfam:Q9LU14PhylomeDB:Q9LU14PRIDE:Q9LU14PRO:PR:Q9LU14
ProteinModelPortal:Q9LU14Proteomes:UP000006548RefSeq:NP_188258.1STRING:3702.AT3G16370.1SUPFAM:SSF52266SwissPalm:Q9LU14TAIR:AT3G16370
TMHMM:TMhelixUniGene:At.26974UniProt:Q9LU14
Coordinates (TAIR10) chr3:+:5556928..5558351
Molecular Weight (calculated) 38201.60 Da
IEP (calculated) 8.43
GRAVY (calculated) 0.05
Length 353 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRCTSSFLL LTLVSTLSIL QISFAQLVPA IMTFGDSVVD VGNNNYLPTL FRADYPPYGR DFANHKATGR FCNGKLATDI TAETLGFTKY PPAYLSPEAS
101: GKNLLIGANF ASAASGYDDK AALLNHAIPL YQQVEYFKEY KSKLIKIAGS KKADSIIKGA ICLLSAGSSD FVQNYYVNPL LYKVYTVDAY GSFLIDNFST
201: FIKQVYAVGA RKIGVTSLPP TGCLPAARTL FGFHEKGCVS RLNTDAQNFN KKLNAAASKL QKQYSDLKIV VFDIYSPLYD LVQNPSKSGF TEATKGCCGT
301: GTVETTSLLC NPKSFGTCSN ATQYVFWDSV HPSEAANEIL ATALIGQGFS LLG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)