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AT3G16340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pleiotropic drug resistance 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pleiotropic drug resistance 1 (PDR1); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances; INVOLVED IN: drug transmembrane transport; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), Plant PDR ABC transporter associated (InterPro:IPR013581), Pleiotropic drug resistance protein PDR (InterPro:IPR005285), ABC-2 type transporter (InterPro:IPR013525); BEST Arabidopsis thaliana protein match is: pleiotropic drug resistance 7 (TAIR:AT1G15210.1); Has 382062 Blast hits to 287791 proteins in 4008 species: Archae - 7336; Bacteria - 307356; Metazoa - 10132; Fungi - 7268; Plants - 6380; Viruses - 4; Other Eukaryotes - 43586 (source: NCBI BLink).
Protein Annotations
BioGrid:6215eggNOG:COG0842eggNOG:KOG0065EMBL:AB023046EMBL:AC001645EMBL:AY050448EMBL:BK001001
EMBL:CP002686EnsemblPlants:AT3G16340EnsemblPlants:AT3G16340.1entrez:820881ExpressionAtlas:Q94A18Gene3D:3.40.50.300GeneID:820881
Genevisible:Q94A18GO:GO:0005524GO:GO:0005886GO:GO:0006855GO:GO:0015850GO:GO:0016021GO:GO:0042626
GO:GO:1901140GO:GO:1901141hmmpanther:PTHR19241hmmpanther:PTHR19241:SF246HOGENOM:HOG000238051InParanoid:Q94A18InterPro:IPR003439
InterPro:IPR003593InterPro:IPR013525InterPro:IPR013581InterPro:IPR027417InterPro:IPR029481OMA:EMYSALPPaxDb:Q94A18
Pfam:PF00005Pfam:PF01061Pfam:PF08370Pfam:PF14510Pfam:Q94A18Pfscan:PS50893PhylomeDB:Q94A18
PRIDE:Q94A18PRO:PR:Q94A18PROSITE:PS50893ProteinModelPortal:Q94A18Proteomes:UP000006548RefSeq:NP_566543.1SMART:SM00382
SMR:Q94A18STRING:3702.AT3G16340.1SUPFAM:SSF52540TAIR:AT3G16340tair10-symbols:ATPDR1tair10-symbols:PDR1TCDB:3.A.1.205.18
TMHMM:TMhelixUniGene:At.48129UniProt:Q94A18
Coordinates (TAIR10) chr3:+:5539897..5546263
Molecular Weight (calculated) 160307.00 Da
IEP (calculated) 8.50
GRAVY (calculated) 0.06
Length 1416 amino acids
Sequence (TAIR10)
(BLAST)
0001: METLSRSLSK SLGELLASNS NNHFSRRSGS TIDDHDEEAL KWAALEKLPT FARLRTTIIH PHEDLVDVTK LGVDDRQKFI DSIFKVTEED NEKFLKKFRN
0101: RIDRVRIKLP TVEVRFEKVT IEANCHIGKR ALPTLPNAAL NIAERGLRLL GFNFTKTTKV TILRDVSGII KPSRMTLLLG PPSSGKTTLL LALAGKLDQS
0201: LKVTGRVTYN GHGLEEFVPQ KTSAYISQND VHVGVMTVQE TLDFSARCQG VGTRYDLLSE LVRREKDAGI LPEPEVDLFM KSIAAGNVKS SLITDYTLRI
0301: LGLDICKDTV VGDEMIRGIS GGQKKRVTTG EMIVGPTKTL FMDEISTGLD SSTTYQIVKC LQEIVRFTDA TVLMSLLQPA PETFELFDDI ILLSEGQIVY
0401: QGPRDHVLTF FETCGFKCPD RKGTADFLQE VTSRKDQEQY WADSKKPYSY ISVSEFSKRF RTFHVGANLE KDLSVPYDRF KSHPASLVFK KHSVPKSQLF
0501: KVCWDRELLL MKRNAFFYIT KTVQIIIMAL IASTVYLRTE MGTKNESDGA VYIGALMFSM IVNMFNGFAE LALMIQRLPV FYKQRDLLFH PPWTFSLPTF
0601: LLGIPISIFE SVVWVTITYY MIGFAPELSR FLKHLLVIFL TQQMAGGIFR FIAATCRSMI LANTGGALVI LLLFLLGGFI VPRGEIPKWW KWAYWVSPMA
0701: YTYDALTVNE MLAPRWINQP SSDNSTSLGL AVLEIFDIFT DPNWYWIGVG GILGFTVLFN ILVTLALTFL NPLEKQQAVV SKENTEENRA ENGSKSKSID
0801: VKRGMVLPFT PLTMSFDNVN YYVDMPKEMK EQGVSKDKLQ LLKEVTGVFR PGVLTALMGV SGAGKTTLMD VLAGRKTGGY IEGDIRISGF PKRQETFARI
0901: SGYCEQNDIH SPQVTVKESL IYSAFLRLPK EVTKYEKMRF VDEVMELVEL ESLKDAVVGL PGITGLSTEQ RKRLTIAVEL VANPSIIFMD EPTSGLDARA
1001: AAIVMRTVRN TVDTGRTVVC TIHQPSIDIF EAFDELLLLK RGGQVIYAGP LGQNSHKIIE YFQAIHGVPK IKEKYNPATW MLEVSSMAAE AKLEIDFAEH
1101: YKTSSLYQQN KNLVKELSTP PQGASDLYFS TRFSQSLLGQ FKSCLWKQWI TYWRTPDYNL ARFFFTLAAA VMLGSIFWKV GTKRENANDL TKVIGAMYAA
1201: VLFVGVNNSS SVQPLIAVER SVFYRERAAE MYSALPYALA QVVCEIPYVL IQTTYYTLII YAMMCFEWTL AKFFWFYFVS FMSFLYFTYY GMMTVALTPN
1301: QQVAAVFAGA FYGLFNLFSG FVIPRPRIPK WWIWYYWICP VAWTVYGLIV SQYGDVEDTI KVPGMANDPT IKWYIENHYG YDADFMIPIA TVLVGFTLFF
1401: AFMFAFGIRT LNFQQR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)