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AT3G16290.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid envelope plastid inner membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AAA-type ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2083 (EMB2083); FUNCTIONS IN: in 8 functions; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, core (InterPro:IPR003959), Peptidase M41 (InterPro:IPR000642), Peptidase S16, Lon protease, C-terminal (InterPro:IPR001984); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 40436 Blast hits to 36159 proteins in 3226 species: Archae - 1511; Bacteria - 13353; Metazoa - 6817; Fungi - 4228; Plants - 3474; Viruses - 31; Other Eukaryotes - 11022 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0465eggNOG:KOG0731EMBL:AB023046EMBL:AC001645EMBL:BX823945EMBL:CP002686EnsemblPlants:AT3G16290
EnsemblPlants:AT3G16290.1entrez:820876Gene3D:3.40.50.300GeneID:820876Genevisible:A8MPR5GO:GO:0004176GO:GO:0004222
GO:GO:0005524GO:GO:0005739GO:GO:0006508GO:GO:0008237GO:GO:0009507GO:GO:0009941GO:GO:0016021
GO:GO:0031969Gramene:AT3G16290.1hmmpanther:PTHR23076hmmpanther:PTHR23076:SF56HOGENOM:HOG000015086InParanoid:A8MPR5IntAct:A8MPR5
InterPro:IPR000642InterPro:IPR003593InterPro:IPR003959InterPro:IPR027417KEGG:ath:AT3G16290ncoils:CoilOMA:DELWYGE
PaxDb:A8MPR5Pfam:PF00004Pfam:PF01434PhylomeDB:A8MPR5PRIDE:A8MPR5ProteinModelPortal:A8MPR5Proteomes:UP000006548
RefSeq:NP_566541.1SMART:SM00382SMR:A8MPR5STRING:3702.AT3G16290.1SUPFAM:SSF140990SUPFAM:SSF52540TAIR:AT3G16290
tair10-symbols:EMB2083UniGene:At.38918UniProt:A8MPR5
Coordinates (TAIR10) chr3:-:5521187..5524995
Molecular Weight (calculated) 99870.20 Da
IEP (calculated) 9.78
GRAVY (calculated) -0.48
Length 876 amino acids
Sequence (TAIR10)
(BLAST)
001: MACRFPLHSS SPSQFLSPEN RQRLPRNYPS ISCQNNSATN VVHEDGDDND KAKTNQVNLL AIPITLTIIS ASLAKPSFAA AKVTERKRTQ KKPQEALTLE
101: QLKAWSKDLP VVSNRIPYTD ILSLKAEGKL KHVIKPPNLS LRQKAEPVLV VLEDSRVLRT VLPSLEGNKR FWEQWDELGI DVQCVNAYTP PVKRPPVPSP
201: YLGFLWKVPA YMLTWVKPKK ESKRAAELKR MREDFKRQRK EEIETMKEER VMMEKTMKAQ KKQQERKKRK AVRKKKYEES LREARKNYRD MADMWARLAQ
301: DPNVATALGL VFFYIFYRVV VLNYRKQKKD YEDRLKIEKA EADERKKMRE LEREMEGIEE EDEEVEEGTG EKNPYLQMAM QFMKSGARVR RASNKRLPEY
401: LERGVDVKFT DVAGLGKIRL ELEEIVKFFT HGEMYRRRGV KIPGGILLCG PPGVGKTLLA KAVAGEAGVN FFSISASQFV EIYVGVGASR VRALYQEARE
501: NAPSVVFIDE LDAVGRERGL IKGSGGQERD ATLNQLLVSL DGFEGRGEVI TIASTNRPDI LDPALVRPGR FDRKIFIPKP GLIGRMEILQ VHARKKPMAE
601: DLDYMAVASM TDGMVGAELA NIVEIAAINM MRDGRTELTT DDLLQAAQIE ERGMLDRKDR SLETWRQVAI NEAAMAVVAV NFPDMKNIEF LTINPRAGRE
701: LGYVRVKMDH IKFKEGMLSR QSILDHITVQ LAPRAADELW YGEDQLSTIW AETSDNARSA ARSLVLGGLS DKHHGLNNFW VADRINDIDV EALRILNMCY
801: ERAKEILGRN RTLMDEVVEK LVQKKSLTKQ EFFTLVELYG SSKPMPPSIL ELRKIKRLEL EEMVLKLDMT TARNSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)