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AT3G16260.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tRNAse Z4
Curator
Summary (TAIR10)
Encodes a tRNase Z.
Computational
Description (TAIR10)
tRNAse Z4 (TRZ4); FUNCTIONS IN: 3'-tRNA processing endoribonuclease activity, catalytic activity; INVOLVED IN: tRNA 3'-end processing, metabolic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease Z (InterPro:IPR013471); BEST Arabidopsis thaliana protein match is: tRNAse Z3 (TAIR:AT1G52160.1); Has 6299 Blast hits to 4396 proteins in 1654 species: Archae - 442; Bacteria - 4351; Metazoa - 254; Fungi - 243; Plants - 108; Viruses - 0; Other Eukaryotes - 901 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1234eggNOG:KOG2121EMBL:CP002686EnsemblPlants:AT3G16260EnsemblPlants:AT3G16260.1entrez:820872Gene3D:3.60.15.10
GeneID:820872GO:GO:0005739GO:GO:0042780GO:GO:0042781GO:GO:0072684Gramene:AT3G16260.1HAMAP:MF_01818
hmmpanther:PTHR12553hmmpanther:PTHR12553:SF49InParanoid:F4J1H7InterPro:IPR001279InterPro:IPR013471InterPro:IPR027794iPTMnet:F4J1H7
KEGG:ath:AT3G16260KO:K00784OMA:REVNASIPaxDb:F4J1H7Pfam:PF12706Pfam:PF13691PRIDE:F4J1H7
ProteinModelPortal:F4J1H7Proteomes:UP000006548RefSeq:NP_188247.2SMR:F4J1H7STRING:3702.AT3G16260.1SUPFAM:SSF56281TAIR:AT3G16260
tair10-symbols:TRZ4UniGene:At.28143UniProt:F4J1H7
Coordinates (TAIR10) chr3:+:5509397..5513118
Molecular Weight (calculated) 104732.00 Da
IEP (calculated) 7.98
GRAVY (calculated) -0.34
Length 942 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTSSMPQNL SLFGFSPLKS SSFALILRPF SLYPPIFASS SPAPSRRPPR TAGYRRSGPS PPRRKWSSFE EQKRKGRSPM EKDKAISFNH SSDSFEFNKR
101: RAEGLDKVDK PKKNLKRNTR TLNPTNTIAY VQILGTGMDT QDTSPSVLLF FDKQRFIFNA GEGLQRFCTE HKIKLSKVDH IFLSRVCSET AGGLPGLLLT
201: LAGIGEQGLS VNVWGPSDLK YLVDAMRSFI PRAAMVHTRS FGPSLNISDS APQIGLSKPK DDAYVLVDDE VVKISAILLE PSRLEESGSK PGETAVIYVC
301: ELPEIKGKFD PKKAMALGLR AGPKYSYLQS GQSVKSDFKD ITVHPSDVMG PSVPGPVVLL VDCPTESHAE ELLSIPSMKT YYSCLDNSTD GAKLVNCIIH
401: LSPASVTNSS TYRSWMKRFH SAQHILAGHE AKNMEFPILR ASSRITARLN YLCPQFFPAP GFWSHQHDNN SINPTSLSKC FDSNLGESIS AENLLKFTLR
501: PHGNLGVDRS SIPSRLTALR VMDELLSEIP EISSKTEEIK QLWNGQHNKM MIEEPWLGES TVPSCLENIR RDDMEIVLLG TGSSQPSKYR NVTAIYIDLF
601: SRGSILLDCG EGTLGQLKRR YGLEGADEAV RNLRCIWISH IHADHHTGLA RILARRRELL KGLAHEPAIV VGPRSLKNFL DAYQRLEDLD MEFLDCRNTT
701: TTSWASVETS RPEKNTSSGN AEGSLFSKGS LMQSIYKRPS SPLTDNSSAL PFLKKLKKVL GEMGLEHLIS FPVVHCPQAF GVSLKAAERK NIAGDEIPGW
801: KMVYSGDTRP CPEMVEASKG ATVLIHEATF EDALVEEAVA KNHSTTKEAI KVGSSAGVYR TVLTHFSQRY PKIPVIDESH MHNTCIAFDM MSINMADLHV
901: LPKILPYFKT LFRNQVVEEE EEEEETDDDS LIRDKVPSFF IN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)