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AT3G16250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : NDH-dependent cyclic electron flow 1
Curator
Summary (TAIR10)
encodes a novel subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in cyclic electron flow around photosystem I to produce ATP. Contains a 4Fe-4S cluster.
Computational
Description (TAIR10)
NDH-dependent cyclic electron flow 1 (NDF4); FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; INVOLVED IN: photosynthetic electron transport in photosystem I; LOCATED IN: chloroplast thylakoid membrane, chloroplast, NAD(P)H dehydrogenase complex (plastoquinone); EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: 2Fe-2S ferredoxin-like superfamily protein (TAIR:AT4G32590.1); Has 476 Blast hits to 476 proteins in 113 species: Archae - 4; Bacteria - 232; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0633eggNOG:ENOG410IY27EMBL:AB023046EMBL:AY042867EMBL:BT006260EMBL:CP002686EnsemblPlants:AT3G16250
EnsemblPlants:AT3G16250.1entrez:820871Gene3D:3.10.20.30GeneID:820871Genevisible:Q9LU21GO:GO:0006810GO:GO:0009055
GO:GO:0009507GO:GO:0009535GO:GO:0009773GO:GO:0010598GO:GO:0046872GO:GO:0051537Gramene:AT3G16250.1
hmmpanther:PTHR23426hmmpanther:PTHR23426:SF27HOGENOM:HOG000242320IntAct:Q9LU21InterPro:IPR001041InterPro:IPR012675KEGG:ath:AT3G16250
OMA:PKNIPNDPaxDb:Q9LU21Pfam:PF00111Pfam:Q9LU21PhylomeDB:Q9LU21PRIDE:Q9LU21PRO:PR:Q9LU21
ProteinModelPortal:Q9LU21Proteomes:UP000006548RefSeq:NP_188246.1STRING:3702.AT3G16250.1SUPFAM:SSF54292TAIR:AT3G16250tair10-symbols:NDF4
TCDB:3.D.1.8.1UniGene:At.23571UniGene:At.32719UniGene:At.6081UniProt:Q9LU21
Coordinates (TAIR10) chr3:-:5507091..5508320
Molecular Weight (calculated) 22419.50 Da
IEP (calculated) 8.34
GRAVY (calculated) -0.59
Length 204 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSVQLSGSG LVASLPPNHS FSHKTKLNKP NSYFFRSKHN AARTKTVRAI STAPASQPPA ADEPDEPPAV DFAFVHSVLL PDGTPDVHWR RANGGQKLRD
101: IMLDSNIELY GPYSKPLSNC AGVGTCATCM VEIVNGKELL NPRTDIEKEK LKRKPKNWRL ACQTNVGNPD STGLVVIQQL PEWKAHEWNI PKNIPNDDDL
201: ETST
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)