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AT3G16230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Predicted eukaryotic LigT
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1); Has 263 Blast hits to 258 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 13; Plants - 46; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111FMPeggNOG:KOG2814EMBL:CP002686EnsemblPlants:AT3G16230EnsemblPlants:AT3G16230.1EnsemblPlants:AT3G16230.3entrez:820869
ExpressionAtlas:F4J1H3Gene3D:3.30.1370.10Gene3D:3.90.1140.10GeneID:820869GO:GO:0003723Gramene:AT3G16230.1Gramene:AT3G16230.3
hmmpanther:PTHR13360hmmpanther:PTHR13360:SF1InterPro:IPR004087InterPro:IPR004088InterPro:IPR009097InterPro:IPR019510Pfam:PF00013
Pfam:PF10469Pfscan:PS50084PROSITE:PS50084Proteomes:UP000006548RefSeq:NP_001189910.1RefSeq:NP_188244.3SMART:SM00322
SMR:F4J1H3STRING:3702.AT3G16230.2SUPFAM:SSF54791SUPFAM:SSF55144TAIR:AT3G16230UniGene:At.21462UniProt:F4J1H3
Coordinates (TAIR10) chr3:+:5500991..5503303
Molecular Weight (calculated) 45397.80 Da
IEP (calculated) 9.15
GRAVY (calculated) -0.29
Length 409 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGYKKQKMV NLVWRPISTQ TSSVIAEAGN EVQEVAQCSK SSDVSKEVIE GETASVVSAG KHSVSLEVGA SLIKFIRGKE GTTQMKLEEE MGVKIILPSS
101: RNKDHISIEG GSVDCVTKAS KRIATIIDEV VRSPSLDYSH FVSLPLAIHP ELVDKLVNFQ NSILGIHSIA SDKQDDQANR ATTSVAVDLK ANSETNQVNV
201: GIKSIPIVSY PPKAKSKSST LLDLGIEKSI FIKPSTFHLT VVMLKLWNKD RVNAACDVLK SIFPSVMDAL DNKPVFIRLK GLDCMRGPLD KTRVLYAPVE
301: EIGDEGRLLR ACQVITDAFV KAGLVLEKDA KQSLKLHVTV MNARHRKRRK NNKKKMETFD AREIHKQFGN EDWGEYLIQE AHLSQRFVFD QNGYYRCCGS
401: IPFPGEQRA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)