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AT3G16220.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

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SUBAcon:
cytosol 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Predicted eukaryotic LigT
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Predicted eukaryotic LigT; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of transcription; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Predicted eukaryotic LigT (InterPro:IPR009210), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16230.3); Has 246 Blast hits to 244 proteins in 87 species: Archae - 0; Bacteria - 0; Metazoa - 165; Fungi - 11; Plants - 39; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111FMPeggNOG:KOG2814EMBL:BT012638EMBL:CP002686EnsemblPlants:AT3G16220EnsemblPlants:AT3G16220.1entrez:820868
Gene3D:3.90.1140.10GeneID:820868Gramene:AT3G16220.1hmmpanther:PTHR13360hmmpanther:PTHR13360:SF1HOGENOM:HOG000030367InterPro:IPR009097
InterPro:IPR019510KEGG:ath:AT3G16220OMA:SLPFPHKPfam:PF10469PhylomeDB:Q6NKQ6Proteomes:UP000006548RefSeq:NP_188243.2
STRING:3702.AT3G16220.1SUPFAM:SSF55144TAIR:AT3G16220UniGene:At.38926UniProt:Q6NKQ6
Coordinates (TAIR10) chr3:+:5497713..5499068
Molecular Weight (calculated) 29479.40 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.50
Length 257 amino acids
Sequence (TAIR10)
(BLAST)
001: MENLNHKWDR CSSSHQTPLS FKGNQKQIGQ GQREVFTHFV SLPLAIYPDL TKNIEAFQNS VLGNNDKDPL KFQSTLAEMG IEKSIFVTPK TFHLTVVMLK
101: LENNESVVKA QNILQSIFSN VRQALKNRPV FIRLRGLECM SGSLDKTRVL YAPVEEVGRE GRLLNACHVI IDAFENVGFA GKDAKSRLKL HATLMNASYR
201: KDKSKKMDTF DAREIHKEFE NKDWGTYLIR EAHISQRYKY DPNGYFHCCA SLPFPHK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)