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AT3G16180.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Major facilitator superfamily protein; FUNCTIONS IN: transporter activity; INVOLVED IN: oligopeptide transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Oligopeptide transporter (InterPro:IPR000109), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G52190.1); Has 5584 Blast hits to 5329 proteins in 963 species: Archae - 0; Bacteria - 2098; Metazoa - 610; Fungi - 414; Plants - 2170; Viruses - 0; Other Eukaryotes - 292 (source: NCBI BLink).
Protein Annotations
BioGrid:6198eggNOG:COG3104eggNOG:KOG1237EMBL:AB012247EMBL:AY099590EMBL:CP002686EnsemblPlants:AT3G16180
EnsemblPlants:AT3G16180.1entrez:820864GeneID:820864Genevisible:Q8LPL2GO:GO:0005886GO:GO:0016021GO:GO:0080054
GO:GO:0080055Gramene:AT3G16180.1hmmpanther:PTHR11654hmmpanther:PTHR11654:SF157HOGENOM:HOG000237399InParanoid:Q8LPL2InterPro:IPR000109
InterPro:IPR020846KEGG:ath:AT3G16180OMA:LQAQSMNPANTHER:PTHR11654PaxDb:Q8LPL2Pfam:PF00854Pfam:Q8LPL2
PhylomeDB:Q8LPL2PRIDE:Q8LPL2PRO:PR:Q8LPL2ProteinModelPortal:Q8LPL2Proteomes:UP000006548Reactome:R-ATH-427975RefSeq:NP_188239.1
SMR:Q8LPL2STRING:3702.AT3G16180.1SUPFAM:SSF103473TAIR:AT3G16180TMHMM:TMhelixUniGene:At.26494UniGene:At.71147
UniProt:Q8LPL2
Coordinates (TAIR10) chr3:-:5481477..5484943
Molecular Weight (calculated) 65336.70 Da
IEP (calculated) 9.31
GRAVY (calculated) 0.25
Length 591 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPPDQTES KETLQQPITR RRTKGGLLTM PFIIANEGFE KVASYGLLQN MILYLMSDYR LGLVKGQTVL FMWVAATNFM PLVGAFLSDS YLGRFLTIVI
101: ASLSSLLGMV VLWLTAMLPQ VKPSPCVATA GTNCSSATSS QLALLYTAFA LISIGSGGIR PCSLAFGADQ LDNKENPKNE RVLESFFGWY YASSSVAVLI
201: AFTVIVYIQD HLGWKIGFGI PAILMLLAGF LFVFASPLYV KRDVSKSLFT GLAQVVAAAY VKRNLTLPDH HDSRDCYYRL KDSELKAPSD KLRFLNKACA
301: ISNRDEDLGS DGLALNQWRL CTTDQVEKLK ALVKVIPVWS TGIMMSINVS QNSFQLLQAK SMDRRLSSNS TFQIPAGSFG MFTIIALISW VVLYDRAILP
401: LASKIRGRPV RVNVKIRMGL GLFISFLAMA VSATVEHYRR KTAISQGLAN DANSTVSISA MWLVPQYVLH GLAEALTGIG QTEFFYTEFP KSMSSIAASL
501: FGLGMAVANI LASVILNAVK NSSKQGNVSW IEDNINKGHY DYYYWVLAIL SFVNVIYYVV CSWSYGPTVD QVRNDKVNGM RKEEEEVIKL N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)