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AT3G16170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 0.914
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AMP-dependent synthetase and ligase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AMP-dependent synthetase and ligase family protein; FUNCTIONS IN: catalytic activity, AMP binding; INVOLVED IN: metabolic process; LOCATED IN: membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: AMP-binding, conserved site (InterPro:IPR020845), AMP-dependent synthetase/ligase (InterPro:IPR000873); BEST Arabidopsis thaliana protein match is: AMP-dependent synthetase and ligase family protein (TAIR:AT3G48990.1); Has 81919 Blast hits to 74550 proteins in 3809 species: Archae - 1169; Bacteria - 53765; Metazoa - 3235; Fungi - 4485; Plants - 2227; Viruses - 1; Other Eukaryotes - 17037 (source: NCBI BLink).
Protein Annotations
EC:6.2.1.n3eggNOG:COG0318eggNOG:KOG1176EMBL:AB012247EMBL:AY084636EMBL:AY250842EMBL:BT000771
EMBL:CP002686EnsemblPlants:AT3G16170EnsemblPlants:AT3G16170.1entrez:820862GeneID:820862Genevisible:Q8H151GO:GO:0005634
GO:GO:0005739GO:GO:0005829GO:GO:0006633GO:GO:0016020GO:GO:0090409GO:GO:0090410Gramene:AT3G16170.1
hmmpanther:PTHR24095hmmpanther:PTHR24095:SF52HOGENOM:HOG000229983InParanoid:Q8H151InterPro:IPR000873InterPro:IPR020845InterPro:IPR025110
KEGG:ath:AT3G16170KO:K18660OMA:GVFLEYWPaxDb:Q8H151Pfam:PF00501Pfam:PF13193Pfam:Q8H151
PRIDE:Q8H151PRO:PR:Q8H151PROSITE:PS00455ProteinModelPortal:Q8H151Proteomes:UP000006548Reactome:R-ATH-75876RefSeq:NP_566537.1
scanprosite:PS00455SMR:Q8H151STRING:3702.AT3G16170.1SUPFAM:SSF56801TAIR:AT3G16170UniGene:At.19800UniProt:Q8H151
Coordinates (TAIR10) chr3:+:5476490..5480128
Molecular Weight (calculated) 60065.50 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.29
Length 544 amino acids
Sequence (TAIR10)
(BLAST)
001: MEVFKAAFSE ASNSCDRIAI KADGKSYSYG QLTSSALRIS KLFLKDDTTN GGQETKKYEG FGSLKGARIG IVAKPSAEFV AGVLGTWFSG GVAVPLALSY
101: PEAELLHVMN DSDISLLLST EDHSETMKTI AAKSGARFHL IPPVVNSTSE TVACNQFQDD SFEAEGKFLD DPALIVYTSG TTGKPKGVVH THNSINSQVR
201: MLTEAWEYTS ADHFLHCLPL HHVHGLFNAL FAPLYARSLV EFLPKFSVSG IWRRWRESYP VNDEKTNDSI TVFTGVPTMY TRLIQGYEAM DKEMQDSSAF
301: AARKLRLMMS GSSALPRPVM HQWESITGHR LLERYGMTEF VMAMSNPLRG ARNAGTVGKP LPGVEAKIKE DENDANGVGE ICVKSPSLFK EYWNLPEVTK
401: ESFTEDGYFK TGDAGRVDED GYYVILGRNS ADIMKVGGYK LSALEIESTL LEHPTVAECC VLGLTDNDYG EAVTAIIIAE SAAKKRREDE SKPVITLEEL
501: CGWAKDKLAP YKLPTRLLIW ESLPRNAMGK VNKKELKKSL ENQE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)