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AT3G16130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RHO guanyl-nucleotide exchange factor 13
Curator
Summary (TAIR10)
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational
Description (TAIR10)
RHO guanyl-nucleotide exchange factor 13 (ROPGEF13); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.1); Has 315 Blast hits to 313 proteins in 20 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 0; Plants - 304; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioGrid:6192eggNOG:ENOG410JU4CeggNOG:ENOG4110780EMBL:AB012247
EMBL:CP002686EnsemblPlants:AT3G16130EnsemblPlants:AT3G16130.1entrez:820858
GeneID:820858Genevisible:F4J1G1GO:GO:0005089GO:GO:0043547
Gramene:AT3G16130.1HOGENOM:HOG000238290InParanoid:F4J1G1IntAct:F4J1G1
InterPro:IPR005512KEGG:ath:AT3G16130OMA:MFDAEQFPaxDb:F4J1G1
Pfam:F4J1G1Pfam:PF03759Pfscan:PS51334PRIDE:F4J1G1
PRO:PR:F4J1G1PROSITE:PS51334ProteinModelPortal:F4J1G1Proteomes:UP000006548
RefSeq:NP_188234.1SMR:F4J1G1STRING:3702.AT3G16130.1TAIR:AT3G16130
tair10-symbols:ATROPGEF13tair10-symbols:PIRF2tair10-symbols:ROPGEF13UniGene:At.25110
UniGene:At.25220UniGene:At.72250UniProt:F4J1G1
Coordinates (TAIR10) chr3:+:5466246..5468512
Molecular Weight (calculated) 65949.70 Da
IEP (calculated) 5.43
GRAVY (calculated) -0.60
Length 576 amino acids
Sequence (TAIR10)
(BLAST)
001: MVKASEKEHE KYKPKLFDLE NVKKKNSSSR HFKRWNSDSA LRIEDPDIDD GTVFKKTATS SIQPILPVLA MDEQPQPREA TDEESQKDSG KREIISFLGY
101: NEKFTRDQVI LRFRGLQAKS CYFAYVTELE QMKDKFAKLL LGEDMSGGSK GVSSALALSN AITNLAASAF GEIRRLEAIS EDKKERWRRE IGWLLSVTDH
201: IVEFSPTHQT NEDGSSMEVM TTKQRTDLVS NIPSLKKLDE MLLDCLDKFK DQDEFYYVTP GSPESENSNS TRNDDKWWLP IVKVPPKGLS ETLKRFLLSQ
301: RECVCQVLNS AMAINSQVLT EMEIPESYID SLPKKGRASL GDMIYRMITL EMFDAEQFLL EMDLSSEHKI LDLKNKFEAS VVIWQRKIVQ IDNKSSSPWS
401: TNLSMDKRQQ LEERAATILQ LIKQEFPGIS QSTLDISKIQ FNRDIGLAIV ESYSRILESL AHTVMSRIED VLEADQLTQN PELAMCKIHI VKETESPEKE
501: EEPNFCLLED RPKKQKPTIS LSEVMQWNIE TNEPRKEKSD KKLLTRVSSM IMSNNKKTTY LESLGTTRSP TAGRYS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)