suba logo
AT3G16120.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dynein light chain type 1 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dynein light chain type 1 family protein; FUNCTIONS IN: microtubule motor activity; INVOLVED IN: microtubule-based process; LOCATED IN: microtubule associated complex; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Dynein light chain, type 1/2 (InterPro:IPR001372); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 11 (TAIR:AT1G52240.2); Has 1266 Blast hits to 1264 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 664; Fungi - 103; Plants - 251; Viruses - 0; Other Eukaryotes - 248 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111NK2eggNOG:KOG3430EMBL:AB012247EMBL:AY086498EMBL:BT028884EMBL:CP002686EnsemblPlants:AT3G16120
EnsemblPlants:AT3G16120.1entrez:820857Gene3D:3.30.740.10GeneID:820857GO:GO:0005875GO:GO:0007017Gramene:AT3G16120.1
hmmpanther:PTHR11886hmmpanther:PTHR11886:SF47HOGENOM:HOG000211144IntAct:Q9LW74InterPro:IPR001372KEGG:ath:AT3G16120KO:K10418
OMA:FIYFHLGPANTHER:PTHR11886Pfam:PF01221PhylomeDB:Q9LW74Proteomes:UP000006548RefSeq:NP_188233.1SMART:SM01375
SMR:Q9LW74STRING:3702.AT3G16120.1SUPFAM:SSF54648TAIR:AT3G16120UniGene:At.43923UniProt:Q9LW74
Coordinates (TAIR10) chr3:+:5465035..5465395
Molecular Weight (calculated) 10495.80 Da
IEP (calculated) 6.78
GRAVY (calculated) 0.10
Length 93 amino acids
Sequence (TAIR10)
(BLAST)
1: MLEGKAKVEE TDMPVKMQMQ AMKIASQSLD LFDVFDSISI AAHIKKEFDE RYGSGWQCVV GTNFGCFFTH SKGTFIYFHL GTLNFLIFKG ATL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)