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AT3G16080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc-binding ribosomal protein family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc-binding ribosomal protein family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37e, conserved site (InterPro:IPR018267), Ribosomal protein, zinc-binding domain (InterPro:IPR011332), Ribosomal protein L37ae/L37e, N-terminal domain (InterPro:IPR011331), Ribosomal protein L37e (InterPro:IPR001569); BEST Arabidopsis thaliana protein match is: Zinc-binding ribosomal protein family protein (TAIR:AT1G52300.1); Has 993 Blast hits to 993 proteins in 346 species: Archae - 294; Bacteria - 0; Metazoa - 303; Fungi - 142; Plants - 122; Viruses - 0; Other Eukaryotes - 132 (source: NCBI BLink).
Protein Annotations
BioGrid:6187eggNOG:COG2126eggNOG:KOG3475EMBL:AB012247
EMBL:AY085343EMBL:BT025571EMBL:CP002686EnsemblPlants:AT3G16080
EnsemblPlants:AT3G16080.1entrez:820853ExpressionAtlas:Q8LEM8Gene3D:2.20.25.30
GeneID:820853Genevisible:Q8LEM8GO:GO:0003735GO:GO:0006412
GO:GO:0019843GO:GO:0022625GO:GO:0046872Gramene:AT3G16080.1
hmmpanther:PTHR10768HOGENOM:HOG000111076InParanoid:Q8LEM8InterPro:IPR001569
InterPro:IPR011331InterPro:IPR011332InterPro:IPR018267KEGG:ath:AT3G16080
KO:K02922OMA:KSTCASCPaxDb:Q8LEM8Pfam:PF01907
Pfam:Q8LEM8PhylomeDB:Q8LEM8PRIDE:Q8LEM8PRO:PR:Q8LEM8
ProDom:PD005132PROSITE:PS01077ProteinModelPortal:Q0WW79ProteinModelPortal:Q8LEM8
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689
Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_566535.1
scanprosite:PS01077SMR:Q8LEM8STRING:3702.AT3G16080.1SUPFAM:SSF57829
TAIR:AT3G16080UniGene:At.23606UniProt:Q0WW79UniProt:Q8LEM8
Coordinates (TAIR10) chr3:+:5454892..5455677
Molecular Weight (calculated) 10772.10 Da
IEP (calculated) 12.37
GRAVY (calculated) -1.05
Length 95 amino acids
Sequence (TAIR10)
(BLAST)
1: MGKGTGSFGK RRNKSHTLCV RCGRRSFHIQ KSRCSACAYP AARKRTYNWS VKAIRRKTTG TGRMRYLRNV PRRFKTGFRE GTEAKPRSKA SASSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)