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AT3G16000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26987276 (2016): plastid
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19676087 (2009): plastid
  • PMID:18433418 (2008): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MAR binding filament-like protein 1
Curator
Summary (TAIR10)
encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes.
Computational
Description (TAIR10)
MAR binding filament-like protein 1 (MFP1); FUNCTIONS IN: DNA binding; LOCATED IN: chloroplast thylakoid membrane, chloroplast, plastid nucleoid; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 259345 Blast hits to 118150 proteins in 3812 species: Archae - 3889; Bacteria - 64552; Metazoa - 100119; Fungi - 19969; Plants - 13824; Viruses - 1177; Other Eukaryotes - 55815 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IVDAeggNOG:ENOG410YNSEEMBL:AB012247EMBL:BT008690EMBL:CP002686EnsemblPlants:AT3G16000EnsemblPlants:AT3G16000.1
entrez:820845GeneID:820845Genevisible:Q9LW85GO:GO:0003677GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0016363GO:GO:0042646Gramene:AT3G16000.1hmmpanther:PTHR13140hmmpanther:PTHR13140:SF460HOGENOM:HOG000237577InParanoid:Q9LW85
iPTMnet:Q9LW85KEGG:ath:AT3G16000ncoils:CoilOMA:DHANANAPaxDb:Q9LW85Pfam:Q9LW85PhylomeDB:Q9LW85
PRIDE:Q9LW85PRO:PR:Q9LW85ProteinModelPortal:Q9LW85Proteomes:UP000006548RefSeq:NP_188221.2STRING:3702.AT3G16000.1SUPFAM:SSF57997
TAIR:AT3G16000tair10-symbols:MFP1UniGene:At.25702UniProt:Q9LW85
Coordinates (TAIR10) chr3:-:5431041..5433613
Molecular Weight (calculated) 81977.00 Da
IEP (calculated) 5.12
GRAVY (calculated) -0.77
Length 726 amino acids
Sequence (TAIR10)
(BLAST)
001: MGFLIGGSCF VPSVPLHSRF LSSPSSSSSS SPSSSQFGLL CSSNVAKFKR RRPTLASLNQ EDGYEYDVAS AKRRAFLLVG ISVLPFLQLR SPALADERGN
101: EIKTSKVDLE TEVAVVSEGT SPNPFLALLN GLGIFSAGVL GALYALARQD TKAAEETIES LKNQLKDRER ALVLKEKDFE AKLQHEQEER KKEVEKAKEE
201: QLSLINQLNS AKDLVTELGR ELSSEKKLCE KLKDQIESLE NSLSKAGEDK EALETKLREK LDLVEGLQDR INLLSLELKD SEEKAQRFNA SLAKKEAELK
301: ELNSIYTQTS RDLAEAKLEI KQQKEELIRT QSELDSKNSA IEELNTRITT LVAEKESYIQ KLDSISKDYS ALKLTSETQA AADAELISRK EQEIQQLNEN
401: LDRALDDVNK SKDKVADLTE KYEDSKRMLD IELTTVKNLR HELEGTKKTL QASRDRVSDL ETMLDESRAL CSKLESELAI VHEEWKEAKE RYERNLDAEK
501: QKNEISASEL ALEKDLRRRV KDELEGVTHE LKESSVKNQS LQKELVEIYK KVETSNKELE EEKKTVLSLN KEVKGMEKQI LMEREARKSL ETDLEEAVKS
601: LDEMNKNTSI LSRELEKVNT HASNLEDEKE VLQRSLGEAK NASKEAKENV EDAHILVMSL GKEREVLEKK VKKLEEDLGS AKGEILRMRS QPDSVKAVNS
701: TDNKEKSDNT VTVKKVVRRR KSSTSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)