AT3G15940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : UDP-Glycosyltransferase superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT1G52420.1); Has 9778 Blast hits to 9756 proteins in 1676 species: Archae - 288; Bacteria - 7022; Metazoa - 45; Fungi - 51; Plants - 181; Viruses - 0; Other Eukaryotes - 2191 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5393632..5396187 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78711.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.77 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||
| Length | 697 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDLRLSPLK LGSFKSSLSG RSTPRGSPTL RKVHSGRTPR REGKGSGGAV QWFRSNRLLY WLLLITLWTY LGFYVQSRWA HDDDNKVEFL RFGGKLREDV 101: LHVEQNKRRD LVADESSHAV VDHTNIVHLG VNKRMHVTLA KKEDSTSRRS VSPRRRTRKA SRSSRTRIRS TQKVRKVMET KELDEQDQEL PNINVTYGKL 201: FGPFGSLEDR ILEWSPQKRS GTCDRKSDFK RLVWSRRFVL LFHELSMTGA PISMMELASE LLSCGATVYA VVLSRRGGLL QELTRRRIKV VEDKGELSFK 301: TAMKADLVIA GSAVCASWID QYMDHHPAGG SQIAWWVMEN RREYFDRAKP VLDRVKLLIF LSEVQSKQWL TWCEEDHVKL RSQPVIVPLS VNDELAFVAG 401: VSSSLNTPTL TQETMKEKRQ KLRESVRTEF GLTDKDMLVM SLSSINPGKG QLLLLESVAL ALEREQTQEQ VAKRNQSKII KNLNGIRKEK ISLSARHRLR 501: GSSRKMKITS PAVDNHPSVL SATGRRKLLL SGNVTQKQDL KLLLGSVGSK SNKVAYVKEM LSFLSNNGNL SNSVLWTPAT TRVASLYSAA DVYVTNSQGV 601: GETFGRVTIE AMAYGLPVLG TDAGGTKEIV EHNVTGLLHP VGRAGNKVLA QNLLFLLRNP STRLQLGSQG REIVEKMYMK QHMYKRFVDV LVKCMRP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)