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AT3G15930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.938
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 42861 Blast hits to 14596 proteins in 286 species: Archae - 0; Bacteria - 14; Metazoa - 129; Fungi - 192; Plants - 41743; Viruses - 0; Other Eukaryotes - 783 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB026653EMBL:CP002686
EnsemblPlants:AT3G15930EnsemblPlants:AT3G15930.1entrez:820836Gene3D:1.25.40.10
GeneID:820836Genevisible:Q9LSB8GO:GO:0008270Gramene:AT3G15930.1
HOGENOM:HOG000237569InParanoid:Q9LSB8InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867KEGG:ath:AT3G15930OMA:RISWTIMPaxDb:Q9LSB8
Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF14432
Pfam:Q9LSB8Pfscan:PS51375PhylomeDB:Q9LSB8PRIDE:Q9LSB8
PRO:PR:Q9LSB8PROSITE:PS51375ProteinModelPortal:Q9LSB8Proteomes:UP000006548
RefSeq:NP_188214.1SMR:Q9LSB8STRING:3702.AT3G15930.1SUPFAM:SSF48452
TAIR:AT3G15930TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.53331
UniProt:Q9LSB8
Coordinates (TAIR10) chr3:+:5387444..5389690
Molecular Weight (calculated) 77688.50 Da
IEP (calculated) 8.14
GRAVY (calculated) -0.12
Length 687 amino acids
Sequence (TAIR10)
(BLAST)
001: MILRNPLKSP FNSELSIFKA LLMSTITESI SNDYSRFISI LGVCKTTDQF KQLHSQSITR GVAPNPTFQK KLFVFWCSRL GGHVSYAYKL FVKIPEPDVV
101: VWNNMIKGWS KVDCDGEGVR LYLNMLKEGV TPDSHTFPFL LNGLKRDGGA LACGKKLHCH VVKFGLGSNL YVQNALVKMY SLCGLMDMAR GVFDRRCKED
201: VFSWNLMISG YNRMKEYEES IELLVEMERN LVSPTSVTLL LVLSACSKVK DKDLCKRVHE YVSECKTEPS LRLENALVNA YAACGEMDIA VRIFRSMKAR
301: DVISWTSIVK GYVERGNLKL ARTYFDQMPV RDRISWTIMI DGYLRAGCFN ESLEIFREMQ SAGMIPDEFT MVSVLTACAH LGSLEIGEWI KTYIDKNKIK
401: NDVVVGNALI DMYFKCGCSE KAQKVFHDMD QRDKFTWTAM VVGLANNGQG QEAIKVFFQM QDMSIQPDDI TYLGVLSACN HSGMVDQARK FFAKMRSDHR
501: IEPSLVHYGC MVDMLGRAGL VKEAYEILRK MPMNPNSIVW GALLGASRLH NDEPMAELAA KKILELEPDN GAVYALLCNI YAGCKRWKDL REVRRKIVDV
601: AIKKTPGFSL IEVNGFAHEF VAGDKSHLQS EEIYMKLEEL AQESTFAAYL PDTSELLFEA GDAYSVANRF VRLSGHPGTK NWKSTVR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)