AT3G15930.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.938 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 42861 Blast hits to 14596 proteins in 286 species: Archae - 0; Bacteria - 14; Metazoa - 129; Fungi - 192; Plants - 41743; Viruses - 0; Other Eukaryotes - 783 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:+:5387444..5389690 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 77688.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 687 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MILRNPLKSP FNSELSIFKA LLMSTITESI SNDYSRFISI LGVCKTTDQF KQLHSQSITR GVAPNPTFQK KLFVFWCSRL GGHVSYAYKL FVKIPEPDVV 101: VWNNMIKGWS KVDCDGEGVR LYLNMLKEGV TPDSHTFPFL LNGLKRDGGA LACGKKLHCH VVKFGLGSNL YVQNALVKMY SLCGLMDMAR GVFDRRCKED 201: VFSWNLMISG YNRMKEYEES IELLVEMERN LVSPTSVTLL LVLSACSKVK DKDLCKRVHE YVSECKTEPS LRLENALVNA YAACGEMDIA VRIFRSMKAR 301: DVISWTSIVK GYVERGNLKL ARTYFDQMPV RDRISWTIMI DGYLRAGCFN ESLEIFREMQ SAGMIPDEFT MVSVLTACAH LGSLEIGEWI KTYIDKNKIK 401: NDVVVGNALI DMYFKCGCSE KAQKVFHDMD QRDKFTWTAM VVGLANNGQG QEAIKVFFQM QDMSIQPDDI TYLGVLSACN HSGMVDQARK FFAKMRSDHR 501: IEPSLVHYGC MVDMLGRAGL VKEAYEILRK MPMNPNSIVW GALLGASRLH NDEPMAELAA KKILELEPDN GAVYALLCNI YAGCKRWKDL REVRRKIVDV 601: AIKKTPGFSL IEVNGFAHEF VAGDKSHLQS EEIYMKLEEL AQESTFAAYL PDTSELLFEA GDAYSVANRF VRLSGHPGTK NWKSTVR |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)