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AT3G15900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 26 Blast hits to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3YNeggNOG:ENOG410Z19WEMBL:AB026653EMBL:AY085772
EMBL:BT025728EMBL:CP002686EnsemblPlants:AT3G15900EnsemblPlants:AT3G15900.1
entrez:820833GeneID:820833GO:GO:0009507GO:GO:0016021
Gramene:AT3G15900.1hmmpanther:PTHR37224hmmpanther:PTHR37224:SF1HOGENOM:HOG000239592
KEGG:ath:AT3G15900OMA:EQADNGQPhylomeDB:Q9LSC1Proteomes:UP000006548
RefSeq:NP_566531.1TAIR:AT3G15900TMHMM:TMhelixUniGene:At.38974
UniGene:At.66462UniProt:Q9LSC1
Coordinates (TAIR10) chr3:-:5376356..5376972
Molecular Weight (calculated) 15011.30 Da
IEP (calculated) 10.84
GRAVY (calculated) 0.15
Length 141 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGSVFVPGM AIGVPTLSRS SSVHRSLEPT KKMTMSSVKF VTSFRNPSNC SGTKRSFRVM ASDDRSEQAD NGQGIQEDLN YLLKIGVGSV AGAAIIKYGS
101: VLFPQITRPN LTLALFIIIA PVVISVILLS LSSSSSSKKQ N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)