AT3G15820.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.694 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phosphatidic acid phosphatase-related / PAP2-related | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Functions as phosphatidylcholine:diacylglycerol cholinephosphotransferase, a major reaction for the transfer of 18:1 into phosphatidylcholine for desaturation and also for the reverse transfer of 18:2 and 18:3 into the triacylglycerols synthesis pathway | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
REDUCED OLEATE DESATURATION 1 (ROD1); BEST Arabidopsis thaliana protein match is: phosphatidic acid phosphatase-related / PAP2-related (TAIR:AT3G15830.1); Has 58 Blast hits to 58 proteins in 17 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 38; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5351217..5353573 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32978.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.59 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 301 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSAAAAETDV SLRRRSNSLN GNHTNGVAID GTLDNNNRRV GDTNTHMDIS AKKTDNGYAN GVGGGGWRSK ASFTTWTARD IVYVVRYHWI PCMFAAGLLF 101: FMGVEYTLQM IPARSEPFDL GFVVTRSLNR VLASSPDLNT VLAALNTVFV GMQTTYIVWT WLVEGRARAT IAALFMFTCR GILGYSTQLP LPQDFLGSGV 201: DFPVGNVSFF LFFSGHVAGS MIASLDMRRM QRLRLAMVFD ILNVLQSIRL LGTRGHYTID LAVGVGAGIL FDSLAGKYEE MMSKRHLGTG FSLISKDSLV 301: N |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)