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AT3G15800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Glycosyl hydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Glycosyl hydrolase superfamily protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: Glycosyl hydrolase superfamily protein (TAIR:AT2G26600.1); Has 2147 Blast hits to 2134 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 2137; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHGKeggNOG:ENOG410YEZDEMBL:CP002686EnsemblPlants:AT3G15800
EnsemblPlants:AT3G15800.1entrez:820823Gene3D:3.20.20.80GeneID:820823
GO:GO:0004553GO:GO:0005975GO:GO:0031225Gramene:AT3G15800.1
hmmpanther:PTHR32227hmmpanther:PTHR32227:SF129InParanoid:F4J030InterPro:IPR000490
InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT3G15800OMA:ESILPYM
PaxDb:F4J030Pfam:PF00332PRIDE:F4J030ProteinModelPortal:F4J030
Proteomes:UP000006548RefSeq:NP_188201.1SMR:F4J030SUPFAM:SSF51445
TAIR:AT3G15800TMHMM:TMhelixUniGene:At.53329UniProt:F4J030
Coordinates (TAIR10) chr3:+:5345051..5346988
Molecular Weight (calculated) 44172.10 Da
IEP (calculated) 9.56
GRAVY (calculated) -0.03
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYCVPLRKS PTSHMVFSSF FLSFLLVFSI LSSQTAVAFI GTYGVNYGRI ADNLPSPDAV ATLLKSAKIR NTRIYDADHS VLTAFRGTGI EIIVGLGNEF
101: LKDISVGEDR AMNWIKENVE PFIRGGTKIS GIAVGNEILG GTDIGLWEAL LPAAKNVYSA LRRLGLHNVV EVSSPHSEAV FANSYPPSSC TFRDDVAPFM
201: KPLLAFFWQI QSPFYINAYP FLAYKSDPIT IDINYALFEH NKGILDPKTK LHYDNMFDAM VDASYAALEK AGYTKVPVIV SETGWASKGD ADEPGASVKN
301: ARTYNRNLRK RLQKRKGTPY RPDMVVRAYV FALFNENSKP GPTSERNFGL FKPDGTIAYD IGLTGLKSSS ATRYRFKSSL VSASAFTCLL LLFHRLFHL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)