AT3G15790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : methyl-CPG-binding domain 11 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. | ||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
methyl-CPG-binding domain 11 (MBD11); FUNCTIONS IN: methyl-CpG binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Methyl-CpG DNA binding (InterPro:IPR001739); BEST Arabidopsis thaliana protein match is: methyl-CPG-binding domain 10 (TAIR:AT1G15340.1); Has 9357 Blast hits to 6006 proteins in 613 species: Archae - 14; Bacteria - 964; Metazoa - 3510; Fungi - 943; Plants - 531; Viruses - 98; Other Eukaryotes - 3297 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5343209..5344386 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 27643.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 254 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGEEEVVSV ELPAPSSWKK LFYPNKVGSV KKTEVVFVAP TGEEISNRKQ LEQYLKSHPG NPAIAEFDWT TSGTPRRSAR ISEKTKATPS PDKEPPKKRG 101: RTKSPVSKKD AEGEKSEGGG EENSHVKDTE MNPPEGIAEN ENVTDKNGSG ETERVNDAKE NIVAEETPNA APVQEEGESM KEKALDSVDD KSKETDKEKD 201: TGSIEKNSVD VEKKTVEASD EKKNSEAETR NHEENGLTTE AEGKEKTAEG EATG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)