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AT3G15780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52550.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AB017071EMBL:AY062809EMBL:AY081613EMBL:CP002686
EnsemblPlants:AT3G15780EnsemblPlants:AT3G15780.1entrez:820821GeneID:820821
GO:GO:0016021Gramene:AT3G15780.1hmmpanther:PTHR37706hmmpanther:PTHR37706:SF1
HOGENOM:HOG000153147KEGG:ath:AT3G15780OMA:AVFFWMFProteomes:UP000006548
RefSeq:NP_188199.1TAIR:AT3G15780TMHMM:TMhelixUniGene:At.27224
UniProt:Q9LW01
Coordinates (TAIR10) chr3:+:5341434..5342351
Molecular Weight (calculated) 12966.80 Da
IEP (calculated) 11.32
GRAVY (calculated) -0.21
Length 117 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMALSNPTT STNLYHYSIL SPFSPPYHLH RRNTVLLASP RRLRRLAVAG GPPSPPGPDP PPPEDTTQLE GLVGAVTRVQ DRVKIFLAVF FWMFLFFWVT
101: VTDGTGKGKG KKGSRFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)