AT3G15680.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
7-day old Arabidopsis seedling (nuclear marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ran BP2/NZF zinc finger-like superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ran BP2/NZF zinc finger-like superfamily protein; FUNCTIONS IN: binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RanBP2-type (InterPro:IPR001876); BEST Arabidopsis thaliana protein match is: Ran BP2/NZF zinc finger-like superfamily protein (TAIR:AT5G25490.1); Has 1825 Blast hits to 997 proteins in 170 species: Archae - 0; Bacteria - 2; Metazoa - 978; Fungi - 140; Plants - 475; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5315437..5316048 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 17564.30 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.44 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.62 | ||||||||||||||||||||||||||||||||||||
| Length | 164 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSRPGDWNCR SCSHLNFQRR DSCQRCGDSR SGPGGVGGLD FGNFGGRAMS AFGFTTGSDV RPGDWYCTVG NCGTHNFASR STCFKCGTFK DETGAGGGGG 101: GIGGPAMFDA DIMRSRVPGN GGRSSWKSGD WICTRIGCNE HNFASRMECF RCNAPRDFSN RTSF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)