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AT3G15580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15494556 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ubiquitin-like superfamily protein
Curator
Summary (TAIR10)
Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition.
Computational
Description (TAIR10)
AUTOPHAGY 8H (APG8H); CONTAINS InterPro DOMAIN/s: Light chain 3 (LC3) (InterPro:IPR004241); BEST Arabidopsis thaliana protein match is: Ubiquitin-like superfamily protein (TAIR:AT3G06420.1); Has 1501 Blast hits to 1499 proteins in 273 species: Archae - 0; Bacteria - 0; Metazoa - 719; Fungi - 178; Plants - 302; Viruses - 3; Other Eukaryotes - 299 (source: NCBI BLink).
Protein Annotations
BioGrid:6132eggNOG:ENOG4111JATeggNOG:KOG1654EMBL:AB028619EMBL:AB073183EMBL:AF492760EMBL:AY086155
EMBL:BT024554EMBL:CP002686EnsemblPlants:AT3G15580EnsemblPlants:AT3G15580.1entrez:820798GeneID:820798Genevisible:Q9LRP7
GO:GO:0000421GO:GO:0005874GO:GO:0006508GO:GO:0006914GO:GO:0006995GO:GO:0015031GO:GO:0019776
GO:GO:0019779GO:GO:0019786GO:GO:0033110Gramene:AT3G15580.1hmmpanther:PTHR10969hmmpanther:PTHR10969:SF25HOGENOM:HOG000232034
InParanoid:Q9LRP7IntAct:Q9LRP7InterPro:IPR004241InterPro:IPR029071iPTMnet:Q9LRP7KEGG:ath:AT3G15580KO:K08341
OMA:ESQDIIAPANTHER:PTHR10969PaxDb:Q9LRP7Pfam:PF02991Pfam:Q9LRP7PhylomeDB:Q9LRP7PRIDE:Q9LRP7
PRO:PR:Q9LRP7ProteinModelPortal:Q9LRP7Proteomes:UP000006548Reactome:R-ATH-1632852RefSeq:NP_566518.1SMR:Q9LRP7STRING:3702.AT3G15580.1
SUPFAM:SSF54236TAIR:AT3G15580tair10-symbols:APG8Htair10-symbols:ATG8IUniGene:At.43256UniProt:Q9LRP7
Coordinates (TAIR10) chr3:-:5274075..5275000
Molecular Weight (calculated) 13252.00 Da
IEP (calculated) 8.17
GRAVY (calculated) -0.23
Length 115 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSFKEQYTL DERLAESREI IAKYPTRIPV IAEKYCKTDL PAIEKKKFLV PRDMSVGQFI YILSARLHLS PGKALFVFVN NTLPQTAALM DSVYESYKDD
101: DGFVYMCYSS EKTFG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)