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AT3G15500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC domain containing protein 3
Curator
Summary (TAIR10)
Encodes an ATAF-like NAC-domain transcription factor that doesn't contain C-terminal sequences shared by CUC1, CUC2 and NAM. Note: this protein (AtNAC3) is not to be confused with the protein encoded by locus AT3G29035, which, on occasion, has also been referred to as AtNAC3.
Computational
Description (TAIR10)
NAC domain containing protein 3 (NAC3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, response to water deprivation, hyperosmotic salinity response, response to abscisic acid stimulus, jasmonic acid mediated signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 19 (TAIR:AT1G52890.1); Has 3043 Blast hits to 3035 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3043; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6123DNASU:820789eggNOG:ENOG410IKRReggNOG:ENOG4111FG3EMBL:AB022218EMBL:AB049070EMBL:AC024081
EMBL:AY084508EMBL:BT025659EMBL:CP002686EnsemblPlants:AT3G15500EnsemblPlants:AT3G15500.1entrez:820789GeneID:820789
Genevisible:Q9LDY8GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009414GO:GO:0009867
Gramene:AT3G15500.1hmmpanther:PTHR31719hmmpanther:PTHR31719:SF34HOGENOM:HOG000237406InParanoid:Q9LDY8InterPro:IPR003441iPTMnet:Q9LDY8
KEGG:ath:AT3G15500OMA:MTSGREYPaxDb:Q9LDY8Pfam:PF02365Pfam:Q9LDY8Pfscan:PS51005PhylomeDB:Q9LDY8
PRO:PR:Q9LDY8PROSITE:PS51005ProteinModelPortal:Q9LDY8Proteomes:UP000006548RefSeq:NP_188169.1SMR:Q9LDY8STRING:3702.AT3G15500.1
SUPFAM:SSF101941TAIR:AT3G15500tair10-symbols:ANAC055tair10-symbols:ATNAC3tair10-symbols:NAC055tair10-symbols:NAC3UniGene:At.20460
UniProt:Q9LDY8
Coordinates (TAIR10) chr3:+:5234731..5235882
Molecular Weight (calculated) 35407.40 Da
IEP (calculated) 8.87
GRAVY (calculated) -0.63
Length 317 amino acids
Sequence (TAIR10)
(BLAST)
001: MGLQELDPLA QLSLPPGFRF YPTDEELMVE YLCRKAAGHD FSLQLIAEID LYKFDPWVLP SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT
101: DKVISTEGRR VGIKKALVFY IGKAPKGTKT NWIMHEYRLI EPSRRNGSTK LDDWVLCRIY KKQTSAQKQA YNNLMTSGRE YSNNGSSTSS SSHQYDDVLE
201: SLHEIDNRSL GFAAGSSNAL PHSHRPVLTN HKTGFQGLAR EPSFDWANLI GQNSVPELGL SHNVPSIRYG DGGTQQQTEG IPRFNNNSDV SANQGFSVDP
301: VNGFGYSGQQ SSGFGFI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)