suba logo
AT3G15480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.926
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21533090 (2011): plasma membrane
  • PMID:31541795 (2020): plasma membrane
  • PMID:30447334 (2019): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT1G52910.1); Has 522 Blast hits to 522 proteins in 99 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 522; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX0HeggNOG:ENOG4111SY7EMBL:AB022218EMBL:AC024081
EMBL:AY057569EMBL:AY086195EMBL:AY090318EMBL:CP002686
EnsemblPlants:AT3G15480EnsemblPlants:AT3G15480.1entrez:820787GeneID:820787
GO:GO:0005886GO:GO:0009506GO:GO:0016021Gramene:AT3G15480.1
hmmpanther:PTHR31769hmmpanther:PTHR31769:SF7HOGENOM:HOG000241124InterPro:IPR009606
KEGG:ath:AT3G15480OMA:ARDAYQNPfam:PF06749PhylomeDB:Q9LDK1
Proteomes:UP000006548RefSeq:NP_566516.1STRING:3702.AT3G15480.1TAIR:AT3G15480
TMHMM:TMhelixUniGene:At.20829UniProt:Q9LDK1
Coordinates (TAIR10) chr3:-:5226489..5227666
Molecular Weight (calculated) 19416.80 Da
IEP (calculated) 8.46
GRAVY (calculated) 0.55
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MASKLVVIIV FILDLIAVGL AIAAEQRRSV GKVETDRDKQ YDYCVYGTDI ATSYGAGAFV LLFVSQVLIM AASRCFCCGK SLNPGGSRAC AIILFLICWV
101: FFLIAEMCLL AASIRNAYHT QYRKMWKVED PPSCEVIRKG VFAAGAAFTL FTAIVSQFYY VCYSRARDAY QNPSY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)