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AT3G15390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : silencing defective 5
Curator
Summary (TAIR10)
Encodes a novel protein that is similar to PRL1 interacting factor and is involved in virus induced silencing.
Computational
Description (TAIR10)
silencing defective 5 (SDE5); CONTAINS InterPro DOMAIN/s: Domain of unknown function DUF1771 (InterPro:IPR013899); BEST Arabidopsis thaliana protein match is: smr (Small MutS Related) domain-containing protein (TAIR:AT5G58720.1); Has 92 Blast hits to 92 proteins in 30 species: Archae - 0; Bacteria - 4; Metazoa - 16; Fungi - 4; Plants - 47; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41101K4eggNOG:KOG2401EMBL:AB022218EMBL:AC024081EMBL:CP002686EnsemblPlants:AT3G15390EnsemblPlants:AT3G15390.1
entrez:820778ExpressionAtlas:Q9LUQ3GeneID:820778Genevisible:Q9LUQ3GO:GO:0006952GO:GO:0010267hmmpanther:PTHR13308
hmmpanther:PTHR13308:SF17HOGENOM:HOG000093041InterPro:IPR013899OMA:KEYWITMPaxDb:Q9LUQ3Pfam:PF08590PhylomeDB:Q9LUQ3
ProteinModelPortal:Q9LUQ3Proteomes:UP000006548RefSeq:NP_188158.4SMART:SM01162STRING:3702.AT3G15390.1TAIR:AT3G15390tair10-symbols:SDE5
UniGene:At.11972UniGene:At.49625UniProt:Q9LUQ3
Coordinates (TAIR10) chr3:-:5196689..5199531
Molecular Weight (calculated) 55165.00 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.76
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MSKIASSSNS DPDSRSLQVL LDTFGSRFSL DDIAAAYCQA SQNVDVAGEI LSAMAEKTPQ CDQVEMKTAT SKPTQVYVPK EVPRQEDSKA KVWRPKRNSI
101: SNGTVSSVIG KEYARTRPIS NAPKEATKPL KINSRDIPET EIWSEEMRKS NEGKISRAPT DVEEFIVKML GEGFQASQEV IHQVLGVCGY DVKKSTEKLL
201: DFSDTKKYAD VGISNEVMSK VDPQRQSTSC NQMELQKISQ SVGARTFTGS QEGRNAKNGL EKEVLEALFS GAERYVDKPK VTRHFGERRP GVAGRPVFKP
301: LEDPFQERVV AVKQSSNTSK EDDDENEFKA HRKAVREHLN QMKEYYGAAA EAFSKGETER AHRLVEKGHF FGQKAREADD KSVAKMIDVN QEDDSTYEED
401: EVVTVNMNEH EAKEALRLLK RQLIYFSGIS SFKYLRVQLG EKKEDFKSKR KHIVKLLEGE SIPWTEEDGG LVIMIRVDEI DPKKLSFAKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)