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AT3G15380.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plasma-membrane choline transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plasma-membrane choline transporter family protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF580 (InterPro:IPR007603); Has 948 Blast hits to 937 proteins in 182 species: Archae - 0; Bacteria - 0; Metazoa - 503; Fungi - 120; Plants - 118; Viruses - 0; Other Eukaryotes - 207 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS0PeggNOG:KOG1362EMBL:AY045917EMBL:BT001974
EMBL:CP002686EnsemblPlants:AT3G15380EnsemblPlants:AT3G15380.1entrez:820777
GeneID:820777GO:GO:0005802GO:GO:0005886GO:GO:0009506
GO:GO:0009524GO:GO:0010051GO:GO:0010088GO:GO:0015220
GO:GO:0015871GO:GO:0016021GO:GO:0048364GO:GO:0090603
GO:GO:0097218Gramene:AT3G15380.1hmmpanther:PTHR12385hmmpanther:PTHR12385:SF47
InterPro:IPR007603KEGG:ath:AT3G15380OMA:AGMPWITPANTHER:PTHR12385
Pfam:PF04515PhylomeDB:Q94AN2Proteomes:UP000006548Reactome:R-ATH-1483191
Reactome:R-ATH-425366RefSeq:NP_566511.1STRING:3702.AT3G15380.1SwissPalm:Q94AN2
TAIR:AT3G15380TMHMM:TMhelixUniGene:At.11972UniGene:At.49625
UniProt:Q94AN2
Coordinates (TAIR10) chr3:+:5193319..5196435
Molecular Weight (calculated) 78741.20 Da
IEP (calculated) 8.28
GRAVY (calculated) 0.32
Length 700 amino acids
Sequence (TAIR10)
(BLAST)
001: MRGPLGAVIG RYTSSDGSAP NDGIIKHNRK CRDITFLIIF IAFWVSMIVN SSFGFNQGNP LRLTYGLDYE GNVCGSKHRH RDLTQLELRY WLNPNQVYES
101: GLKDGELKLA NARTICLLDC PAPSDDTLNW VCDYPDGEIR LKMNDWIDRN YDYFEFLTPE MRNSSLQLQG PCYPVIFPSV NVYWSCQYIA RASNSSLRHW
201: QQMGGVNIQE DMIIDKSIRR SMNSRASVLK RYVADIGKSW PVLIVCGGLV PLFLSIIWLL LIRHFVAAMP WITVVLFNML LISVTVFYYL KAGWIGNDAV
301: TPIIGEHDPY FHVYGRELTH VRGVAILMTF ISVVAILTSI AIIRRILMAT SVLKVAAKVI GEVQALIIFP AIPFAMLAIF YMFWISAALH LFSSGQVVQN
401: NCNNTNCCAY DLVLKKVNCD RCCGYSIHYT PHITIAIFFH LFGCYWATQF FIASSATVIA GSVASYYWAQ GEASPEIPFL PVFASMKRLA RYNLGSVALG
501: SLIVSFVESV RFILEAIRRK TKVSGTIPDH WFWRMAHYTS RGCLKSVEWT IKSVNRNAYI MIAITGKSFC KSSAIATELI ISNILRIGKV NVIGDVILFL
601: GKLCVSLFSA LFGFLMLDSH RYRASHNKVS SPLLPVLACW ALGYIVATLF FAVVEMSIDT IILSFCQDSE ENQGNAQHAP PLLLETLDSN QEEEVQSLTH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)