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AT3G15360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:15593128 (2005): extracellular region
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:11826309 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thioredoxin M-type 4
Curator
Summary (TAIR10)
encodes a prokaryotic thioredoxin
Computational
Description (TAIR10)
thioredoxin M-type 4 (TRX-M4); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: response to oxidative stress, positive regulation of catalytic activity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, cell wall, chloroplast, chloroplast envelope; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin M-type 1 (TAIR:AT1G03680.1); Has 22907 Blast hits to 21478 proteins in 3001 species: Archae - 325; Bacteria - 11943; Metazoa - 2959; Fungi - 1292; Plants - 2075; Viruses - 15; Other Eukaryotes - 4298 (source: NCBI BLink).
Protein Annotations
BioGrid:6109eggNOG:COG0526eggNOG:KOG0910EMBL:AB022218EMBL:AC024081EMBL:AF095752EMBL:AF375443
EMBL:AK227059EMBL:AY060538EMBL:AY088157EMBL:CP002686EnsemblPlants:AT3G15360EnsemblPlants:AT3G15360.1entrez:820775
Gene3D:3.40.30.10GeneID:820775Genevisible:Q9SEU6GO:GO:0000103GO:GO:0004857GO:GO:0005618GO:GO:0006109
GO:GO:0006457GO:GO:0006662GO:GO:0008047GO:GO:0009507GO:GO:0009535GO:GO:0009570GO:GO:0009579
GO:GO:0009735GO:GO:0009941GO:GO:0015035GO:GO:0016671GO:GO:0034599GO:GO:0043085GO:GO:0043086
GO:GO:0045454GO:GO:0055114Gramene:AT3G15360.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF300HOGENOM:HOG000292977InParanoid:Q9SEU6
IntAct:Q9SEU6InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937KEGG:ath:AT3G15360KO:K03671
OMA:FLEFRGLPANTHER:PTHR10438PaxDb:Q9SEU6Pfam:PF00085Pfam:Q9SEU6Pfscan:PS51352PhylomeDB:Q9SEU6
PRIDE:Q9SEU6PRO:PR:Q9SEU6PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q9SEU6Proteomes:UP000006548Reactome:R-ATH-3299685
RefSeq:NP_188155.1scanprosite:PS00194SMR:Q9SEU6STRING:3702.AT3G15360.1SUPFAM:SSF52833TAIR:AT3G15360tair10-symbols:ATHM4
tair10-symbols:ATM4tair10-symbols:TRX-M4TIGRfam:TIGR01068TIGRFAMs:TIGR01068UniGene:At.22877UniProt:Q9SEU6
Coordinates (TAIR10) chr3:+:5188448..5189457
Molecular Weight (calculated) 21173.40 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.12
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLLDSVTV TRVFSLPIAA SVSSSSAAPS VSRRRISPAR FLEFRGLKSS RSLVTQSASL GANRRTRIAR GGRIACEAQD TTAAAVEVPN LSDSEWQTKV
101: LESDVPVLVE FWAPWCGPCR MIHPIVDQLA KDFAGKFKFY KINTDESPNT ANRYGIRSVP TVIIFKGGEK KDSIIGAVPR ETLEKTIERF LVE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)