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AT3G15300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.964
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT5G53830.1); Has 135 Blast hits to 135 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 0; Plants - 124; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNRCeggNOG:ENOG4111AFWEMBL:AP000413EMBL:BT010686EMBL:BT011503EMBL:CP002686EnsemblPlants:AT3G15300
EnsemblPlants:AT3G15300.1entrez:820761GeneID:820761Genevisible:Q9LDZ1GO:GO:0005634Gramene:AT3G15300.1hmmpanther:PTHR33402
hmmpanther:PTHR33402:SF6HOGENOM:HOG000029122InterPro:IPR008889iPTMnet:Q9LDZ1KEGG:ath:AT3G15300OMA:PISRSETPaxDb:Q9LDZ1
Pfam:PF05678Pfam:Q9LDZ1PhylomeDB:Q9LDZ1PRIDE:Q9LDZ1PRO:PR:Q9LDZ1ProteinModelPortal:Q9LDZ1Proteomes:UP000006548
RefSeq:NP_188148.1STRING:3702.AT3G15300.1TAIR:AT3G15300UniGene:At.24906UniProt:Q9LDZ1
Coordinates (TAIR10) chr3:-:5147551..5148210
Molecular Weight (calculated) 23662.90 Da
IEP (calculated) 9.96
GRAVY (calculated) -0.66
Length 219 amino acids
Sequence (TAIR10)
(BLAST)
001: MEISTNPPSS SSSSVSSSII NGSLHHHIIT RSDHYPTTFV QADSSSFKQV VQMLTGSSSP RSPDSPRPPT TPSGKGNFVI PPIKTAQPKK HSGNKLYERR
101: SHGGFNNNLK NSLMINTLMI GGGGAGSPRF SPRNQEILSP SCLDFPKLAL NSPVTPLKQG TNGNEGDPFD KMSPLSEEER GIADKGYYLH RSPISTPRDS
201: EPQLLPLFPV TSPRLSPEM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)