AT3G15200.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.992 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: cytosolic ribosome; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G15010.1); Has 26696 Blast hits to 9471 proteins in 249 species: Archae - 1; Bacteria - 11; Metazoa - 102; Fungi - 194; Plants - 25787; Viruses - 0; Other Eukaryotes - 601 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:5117489..5119060 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61082.90 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.02 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 523 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGGKNKIEIL FQLQSALSRR RISSLVDFRR VFPPETPNHK NNITLSRFHF LGTHFLHSLG APDKFPNRFN DDKDKQSALD VHNIIKHHRG SSPEKIKRIL 101: DKCGIDLTEE LVLEVVNRNR SDWKPAYILS QLVVKQSVHL SSSMLYNEIL DVLGKMRRFE EFHQVFDEMS KRDGFVNEKT YEVLLNRYAA AHKVDEAVGV 201: FERRKEFGID DDLVAFHGLL MWLCRYKHVE FAETLFCSRR REFGCDIKAM NMILNGWCVL GNVHEAKRFW KDIIASKCRP DVVSYGTMIN ALTKKGKLGK 301: AMELYRAMWD TRRNPDVKIC NNVIDALCFK KRIPEALEVF REISEKGPDP NVVTYNSLLK HLCKIRRTEK VWELVEEMEL KGGSCSPNDV TFSYLLKYSQ 401: RSKDVDIVLE RMAKNKCEMT SDLYNLMFRL YVQWDKEEKV REIWSEMERS GLGPDQRTYT IRIHGLHTKG KIGEALSYFQ EMMSKGMVPE PRTEMLLNQN 501: KTKPRVEDKM LRSNLTSEES ESD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)