AT3G15180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.500 nucleus 0.500 ASURE: cytosol,nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), 26S proteasome non-ATPase regulatory subunit 5 (InterPro:IPR019538); Has 113 Blast hits to 113 proteins in 46 species: Archae - 0; Bacteria - 2; Metazoa - 62; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:5111952..5115803 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 56695.30 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.01 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.03 | ||||||||||||||||||||||||||||
| Length | 519 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEDVNQLFDA AFEFAHYPGA QNETSVKEFL DRFPLPVIFN ALQTDPDIPG FENTLVTCLE RLFKTKYGAS LIPQYMPVLQ VGLKADSAVV KSLACKTVLC 101: LLEDCDTNDV SSVQLVVNNG IYPLLLDYII NSDDEVANAA SETIKSLARF PDAMSVIFPS ETNDPTHLRN LAARCSSLAR VRVLSLIVKL FSISRLVASE 201: VKKSGLLDLL EAEMKGTKDT LVILNVLELY YELMEVEHSS EFVPQTSLIQ LLCSIISGTS TGPYEKLRAM MISGRLLSKE NIYKVVEEAS VKALISAIDG 301: SLESVEMNDT DAQEAAIDAL GQMGSTTKGA DLVLSTSPPA ARHVVASAFD RNAHGKQLAA LHALANIAGE TRPKSNRIVD GKAEESLRCL IYDAAAQSTK 401: LTPSGLFLSV LQQSSEIRLA GYRTLTALVA RPWCLVEILA KEEIINIVTD ATTETAKIAM EARYNCCKAI HEAFLCSNFV DDPRRLKTGD KLQEAVRSGP 501: YMSKKHRGAR PEVMTGEGF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)