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AT3G15130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g15130-GFP (AA 1-100)mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g15130-GFP (AA 1-100)plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 42839 Blast hits to 13577 proteins in 243 species: Archae - 0; Bacteria - 0; Metazoa - 52; Fungi - 90; Plants - 42162; Viruses - 0; Other Eukaryotes - 535 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AP001299EMBL:CP002686
EnsemblPlants:AT3G15130EnsemblPlants:AT3G15130.1entrez:820744Gene3D:1.25.40.10
GeneID:820744Genevisible:P0C898GO:GO:0008270Gramene:AT3G15130.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF50HOGENOM:HOG000237570InParanoid:P0C898
InterPro:IPR002885InterPro:IPR011990InterPro:IPR032867KEGG:ath:AT3G15130
OMA:GRSWVEIPaxDb:P0C898Pfam:P0C898Pfam:PF01535
Pfam:PF13041Pfam:PF13812Pfam:PF14432Pfscan:PS51375
PhylomeDB:P0C898PRIDE:P0C898PRO:PR:P0C898PROSITE:PS51375
ProteinModelPortal:P0C898Proteomes:UP000006548RefSeq:NP_188131.1SMR:P0C898
STRING:3702.AT3G15130.1TAIR:AT3G15130TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.65091UniProt:P0C898
Coordinates (TAIR10) chr3:-:5097153..5099222
Molecular Weight (calculated) 77045.80 Da
IEP (calculated) 7.82
GRAVY (calculated) -0.08
Length 689 amino acids
Sequence (TAIR10)
(BLAST)
001: MIPNQRQNLV SILRVCTRKG LSDQGGQVHC YLLKSGSGLN LITSNYLIDM YCKCREPLMA YKVFDSMPER NVVSWSALMS GHVLNGDLKG SLSLFSEMGR
101: QGIYPNEFTF STNLKACGLL NALEKGLQIH GFCLKIGFEM MVEVGNSLVD MYSKCGRINE AEKVFRRIVD RSLISWNAMI AGFVHAGYGS KALDTFGMMQ
201: EANIKERPDE FTLTSLLKAC SSTGMIYAGK QIHGFLVRSG FHCPSSATIT GSLVDLYVKC GYLFSARKAF DQIKEKTMIS WSSLILGYAQ EGEFVEAMGL
301: FKRLQELNSQ IDSFALSSII GVFADFALLR QGKQMQALAV KLPSGLETSV LNSVVDMYLK CGLVDEAEKC FAEMQLKDVI SWTVVITGYG KHGLGKKSVR
401: IFYEMLRHNI EPDEVCYLAV LSACSHSGMI KEGEELFSKL LETHGIKPRV EHYACVVDLL GRAGRLKEAK HLIDTMPIKP NVGIWQTLLS LCRVHGDIEL
501: GKEVGKILLR IDAKNPANYV MMSNLYGQAG YWNEQGNARE LGNIKGLKKE AGMSWVEIER EVHFFRSGED SHPLTPVIQE TLKEAERRLR EELGYVYGLK
601: HELHDIDDES KEENLRAHSE KLAIGLALAT GGLNQKGKTI RVFKNLRVCV DCHEFIKGLS KITKIAYVVR DAVRFHSFED GCCSCGDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)