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AT3G15010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNA-binding (RRM/RBD/RNP motifs) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: leaf senescence, cell death, ethylene biosynthetic process, defense response; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G41060.2); Has 59064 Blast hits to 28085 proteins in 1373 species: Archae - 21; Bacteria - 15117; Metazoa - 26005; Fungi - 3900; Plants - 7947; Viruses - 346; Other Eukaryotes - 5728 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0724eggNOG:KOG0118EMBL:AK316731EMBL:AP000370EMBL:AY063846EMBL:AY091228EMBL:CP002686
EnsemblPlants:AT3G15010EnsemblPlants:AT3G15010.1EnsemblPlants:AT3G15010.2entrez:820730Gene3D:3.30.70.330GeneID:820730Genevisible:Q9LKA4
GO:GO:0000166GO:GO:0003723GO:GO:0005634GO:GO:0005730GO:GO:0006952GO:GO:0008219GO:GO:0009693
GO:GO:0010150Gramene:AT3G15010.1Gramene:AT3G15010.2hmmpanther:PTHR24012hmmpanther:PTHR24012:SF490HOGENOM:HOG000090575InParanoid:Q9LKA4
IntAct:Q9LKA4InterPro:IPR000504InterPro:IPR012677iPTMnet:Q9LKA4KEGG:ath:AT3G15010KO:K12741OMA:GGSMYRM
PaxDb:Q9LKA4Pfam:PF00076Pfam:PF14259Pfam:Q9LKA4Pfscan:PS50102PhylomeDB:Q9LKA4PRIDE:Q9LKA4
PRO:PR:Q9LKA4PROSITE:PS50102ProteinModelPortal:Q9LKA4Proteomes:UP000006548RefSeq:NP_188119.1RefSeq:NP_974317.1SMART:SM00360
SMR:Q9LKA4STRING:3702.AT3G15010.1SUPFAM:SSF54928TAIR:AT3G15010UniGene:At.27179UniProt:Q9LKA4
Coordinates (TAIR10) chr3:+:5052844..5054058
Molecular Weight (calculated) 41782.50 Da
IEP (calculated) 8.71
GRAVY (calculated) -0.40
Length 404 amino acids
Sequence (TAIR10)
(BLAST)
001: MDMMKKRKLD ENGNGLNTNG GGTIGPTRLS PQDARKIIER FTTDQLLDLL QEAIVRHPDV LESVRLTADS DISQRKLFIR GLAADTTTEG LRSLFSSYGD
101: LEEAIVILDK VTGKSKGYGF VTFMHVDGAL LALKEPSKKI DGRVTVTQLA ASGNQGTGSQ IADISMRKIY VANVPFDMPA DRLLNHFMAY GDVEEGPLGF
201: DKVTGKSRGF ALFVYKTAEG AQAALADPVK VIDGKHLNCK LAVDGKKGGK PGMPQAQDGG SGHGHVHGEG MGMVRPAGPY GAAGGISAYG GYSGGPPAHH
301: MNSTHSSMGV GSAGYGGHYG GYGGPGGTGV YGGLGGGYGG PGTGSGQYRM PPSSMPGGGG YPESGHYGLS SSAGYPGQHH QAVGTSPVPR VPHGGMYPNG
401: PPNY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)