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AT3G14780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Transposase, Ptta/En/Spm, plant (InterPro:IPR004252); BEST Arabidopsis thaliana protein match is: glucan synthase-like 4 (TAIR:AT3G14570.2); Has 315 Blast hits to 313 proteins in 50 species: Archae - 2; Bacteria - 16; Metazoa - 11; Fungi - 7; Plants - 181; Viruses - 2; Other Eukaryotes - 96 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G14780-MONOMEREMBL:AK119031EMBL:BT005442EMBL:CP002686EMBL:KJ138826EnsemblPlants:AT3G14780EnsemblPlants:AT3G14780.1
entrez:820706Gene3D:1.25.40.270GeneID:820706GO:GO:0016740Gramene:AT3G14780.1hmmpanther:PTHR12741hmmpanther:PTHR12741:SF22
IntAct:Q8GW77InterPro:IPR004252InterPro:IPR023175KEGG:ath:AT3G14780ncoils:CoilPfam:PF03004Pfam:PF04652
Proteomes:UP000006548RefSeq:NP_188096.2SMR:Q8GW77TAIR:AT3G14780UniGene:At.39176UniProt:Q8GW77
Coordinates (TAIR10) chr3:-:4961897..4963465
Molecular Weight (calculated) 40799.10 Da
IEP (calculated) 4.69
GRAVY (calculated) -0.84
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSNEIAPVD PTDVFLDMDP ILPEDSPATS LFTRPLALKE QYVWEPYDSE KLPETLASGI QRFLRVANLV ESDDPRVAYL CRFYTFEEAH RIDSRSNGRG
101: VRQFKNSLLR RLEKDDEFTI RRRKEINDHK ELKRVYHAYN EYIIRHGASF NLDNSQQEKL INARSIASVL YEILRKIESS MGRASTPESI QLNRDEEIGE
201: LLDMDTSMEE TNKINSDETF VDQKAELVVE KSKVLEDERL TQMFQGDHQY LTQDEKDDIY KEEVQIKKDK RFAYGSMKAV PSLFYEDKYL ETQEKLNKLE
301: KKIEEMELKL KDVDFWTNMM QNMFPDQVPP SMRANQTDNN KNDKLSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)