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AT3G14580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G46100.1); Has 35779 Blast hits to 10850 proteins in 252 species: Archae - 2; Bacteria - 9; Metazoa - 300; Fungi - 243; Plants - 34331; Viruses - 0; Other Eukaryotes - 894 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB023038EMBL:BT029779
EMBL:CP002686EnsemblPlants:AT3G14580EnsemblPlants:AT3G14580.1entrez:820684
GeneID:820684Genevisible:Q9LUD6GO:GO:0005739Gramene:AT3G14580.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF740HOGENOM:HOG000083822InParanoid:Q9LUD6
InterPro:IPR002885KEGG:ath:AT3G14580OMA:NCWPSTKPaxDb:Q9LUD6
Pfam:PF12854Pfam:PF13041Pfam:Q9LUD6Pfscan:PS51375
PhylomeDB:Q9LUD6PRIDE:Q9LUD6PRO:PR:Q9LUD6PROSITE:PS51375
ProteinModelPortal:Q9LUD6Proteomes:UP000006548RefSeq:NP_188076.1SMR:Q9LUD6
STRING:3702.AT3G14580.1TAIR:AT3G14580TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.39207UniGene:At.39208UniProt:Q9LUD6
Coordinates (TAIR10) chr3:+:4903012..4904229
Molecular Weight (calculated) 46714.00 Da
IEP (calculated) 9.29
GRAVY (calculated) -0.31
Length 405 amino acids
Sequence (TAIR10)
(BLAST)
001: MILRRLVLSA TSNSNPRRSQ SLSSSGVRIL SSSSSDRYTS SSQRYSGDDR LARLRHKDWL APNEVLKIFD NVKDPSFLLP AYQHYSKRKD YQPTESLYAL
101: MINKFGQAKM YDEIEEVMRT IKLEKRCRFS EEFFYNLMRI YGNLAGRINR AIEILFGMPD FGCWPSSKSF NFILNLLVSA KLFDEIHKIF VSAPKLGVEI
201: DACCLNILIK GLCESGNLEA ALQLLDEFPQ QKSRPNVMTF SPLIRGFCNK GKFEEAFKLL ERMEKERIEP DTITFNILIS GLRKKGRVEE GIDLLERMKV
301: KGCEPNPGTY QEVLYGLLDK KRNLEAKEMM SQMISWGMRP SFLSYKKMVL GLCETKSVVE MDWVLRQMVN HGFVPKTLMW WKVVQCVVSK NNDDSQANLD
401: RITAC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)