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AT3G14330.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G46790.1); Has 35559 Blast hits to 14091 proteins in 265 species: Archae - 0; Bacteria - 6; Metazoa - 58; Fungi - 108; Plants - 34937; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AB022220EMBL:CP002686EnsemblPlants:AT3G14330EnsemblPlants:AT3G14330.1entrez:820653
Gene3D:1.25.40.10GeneID:820653Genevisible:Q9LUL5GO:GO:0008270GO:GO:0009507GO:GO:0016554GO:GO:1900865
Gramene:AT3G14330.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF913HOGENOM:HOG000237570InParanoid:Q9LUL5InterPro:IPR002885InterPro:IPR011990
InterPro:IPR032867KEGG:ath:AT3G14330OMA:WVCGHSEPaxDb:Q9LUL5Pfam:PF01535Pfam:PF13041Pfam:PF14432
Pfam:Q9LUL5Pfscan:PS51375PhylomeDB:Q9LUL5PRIDE:Q9LUL5PRO:PR:Q9LUL5PROSITE:PS51375ProteinModelPortal:Q9LUL5
Proteomes:UP000006548RefSeq:NP_188050.1SMR:Q9LUL5STRING:3702.AT3G14330.1TAIR:AT3G14330TIGRfam:TIGR00756TIGRFAMs:TIGR00756
UniGene:At.53310UniProt:Q9LUL5
Coordinates (TAIR10) chr3:-:4779688..4782451
Molecular Weight (calculated) 79770.90 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.06
Length 710 amino acids
Sequence (TAIR10)
(BLAST)
001: MMIGKLWRSV GTVGKFDGRY DGVRTMVGKA SNRAGVHVTD TVLFEETSFE FSPSLTPELN EFPMPSLDVI TPQAYLTPLG SQSINHAKFL QIPWRQFVFT
101: KPLGLSKSTK LDEAVTLIEN SSSSPSNLST PEAYTDLLHA CISAKSLHHG IKICSLILNN PSLRHNPKLL SKLITLFSVC RRLDLARKIF DDVTDSSLLT
201: EKVWAAMAIG YSRNGSPRDA LIVYVDMLCS FIEPGNFSIS VALKACVDLK DLRVGRGIHA QIVKRKEKVD QVVYNVLLKL YMESGLFDDA RKVFDGMSER
301: NVVTWNSLIS VLSKKVRVHE MFNLFRKMQE EMIGFSWATL TTILPACSRV AALLTGKEIH AQILKSKEKP DVPLLNSLMD MYGKCGEVEY SRRVFDVMLT
401: KDLASWNIML NCYAINGNIE EVINLFEWMI ESGVAPDGIT FVALLSGCSD TGLTEYGLSL FERMKTEFRV SPALEHYACL VDILGRAGKI KEAVKVIETM
501: PFKPSASIWG SLLNSCRLHG NVSVGEIAAK ELFVLEPHNP GNYVMVSNIY ADAKMWDNVD KIREMMKQRG VKKEAGCSWV QVKDKIQIFV AGGGYEFRNS
601: DEYKKVWTEL QEAIEKSGYS PNTSVVLHDV DEETKANWVC GHSERLATTY SLIHTGEGVP IRITKNLRVC ADCHSWMKIV SQVTRRVIVL RDTKRFHHFV
701: DGICSCKDYW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)