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AT3G14310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26184996 (2015): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25852701 (2015): extracellular region apoplast
  • PMID:24872594 (2014): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21109274 (2011): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pectin methylesterase 3
Curator
Summary (TAIR10)
encodes a pectin methylesterase, targeted by a cellulose binding protein (CBP) from the parasitic nematode Heterodera schachtii during parasitism.
Computational
Description (TAIR10)
pectin methylesterase 3 (PME3); FUNCTIONS IN: pectinesterase activity; INVOLVED IN: response to nematode; LOCATED IN: cell wall, apoplast, plasma membrane, cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: pectin methylesterase 2 (TAIR:AT1G53830.1); Has 3052 Blast hits to 2982 proteins in 347 species: Archae - 6; Bacteria - 639; Metazoa - 1; Fungi - 199; Plants - 2181; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G14310-MONOMERBioGrid:5985EC:3.1.1.11eggNOG:COG4677eggNOG:ENOG410IF38EMBL:AB022220EMBL:AF033204
EMBL:AK221816EMBL:AY037184EMBL:AY052252EMBL:AY058892EMBL:AY143950EMBL:CP002686EnsemblPlants:AT3G14310
EnsemblPlants:AT3G14310.1entrez:820651Gene3D:1.20.140.40Gene3D:2.160.20.10GeneID:820651Genevisible:O49006GO:GO:0005618
GO:GO:0005737GO:GO:0005886GO:GO:0009620GO:GO:0009624GO:GO:0030599GO:GO:0042545GO:GO:0043086
GO:GO:0045330GO:GO:0045490GO:GO:0046910GO:GO:0048046GO:GO:0050829Gramene:AT3G14310.1gramene_pathway:3.1.1.11
gramene_pathway:PWY-1081hmmpanther:PTHR31707hmmpanther:PTHR31707:SF55HOGENOM:HOG000217409InParanoid:O49006InterPro:IPR000070InterPro:IPR006501
InterPro:IPR011050InterPro:IPR012334InterPro:IPR018040InterPro:IPR033131iPTMnet:O49006KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT3G14310KO:K01051ncoils:CoilOMA:KFLARDIPaxDb:O49006Pfam:O49006Pfam:PF01095
Pfam:PF04043PhylomeDB:O49006PRIDE:O49006PRO:PR:O49006PROSITE:PS00503PROSITE:PS00800ProteinModelPortal:O49006
Proteomes:UP000006548RefSeq:NP_188048.1scanprosite:PS00503scanprosite:PS00800SMART:SM00856SMR:O49006STRING:3702.AT3G14310.1
SUPFAM:SSF101148SUPFAM:SSF51126TAIR:AT3G14310tair10-symbols:ATPME3tair10-symbols:PME3TIGRfam:TIGR01614TIGRFAMs:TIGR01614
TMHMM:TMhelixUniGene:At.43283UniGene:At.6066UniGene:At.67322UniGene:At.74977UniPathway:UPA00545UniProt:O49006
Coordinates (TAIR10) chr3:-:4772214..4775095
Molecular Weight (calculated) 64259.40 Da
IEP (calculated) 9.22
GRAVY (calculated) -0.25
Length 592 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPSMKEIFS KDNFKKNKKL VLLSAAVALL FVAAVAGISA GASKANEKRT LSPSSHAVLR SSCSSTRYPE LCISAVVTAG GVELTSQKDV IEASVNLTIT
101: AVEHNYFTVK KLIKKRKGLT PREKTALHDC LETIDETLDE LHETVEDLHL YPTKKTLREH AGDLKTLISS AITNQETCLD GFSHDDADKQ VRKALLKGQI
201: HVEHMCSNAL AMIKNMTDTD IANFEQKAKI TSNNRKLKEE NQETTVAVDI AGAGELDSEG WPTWLSAGDR RLLQGSGVKA DATVAADGSG TFKTVAAAVA
301: AAPENSNKRY VIHIKAGVYR ENVEVAKKKK NIMFMGDGRT RTIITGSRNV VDGSTTFHSA TVAAVGERFL ARDITFQNTA GPSKHQAVAL RVGSDFSAFY
401: NCDMLAYQDT LYVHSNRQFF VKCLIAGTVD FIFGNAAVVL QDCDIHARRP NSGQKNMVTA QGRTDPNQNT GIVIQKCRIG ATSDLQSVKG SFPTYLGRPW
501: KEYSQTVIMQ SAISDVIRPE GWSEWTGTFA LNTLTYREYS NTGAGAGTAN RVKWRGFKVI TAAAEAQKYT AGQFIGGGGW LSSTGFPFSL GL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)