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AT3G14220.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54010.1); Has 3081 Blast hits to 3051 proteins in 109 species: Archae - 0; Bacteria - 135; Metazoa - 0; Fungi - 3; Plants - 2937; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-2308-MONOMEREC:3.1.1.-eggNOG:ENOG410JVYDeggNOG:ENOG41105FVEMBL:AP000416EMBL:BT004323EMBL:BT005625
EMBL:CP002686EnsemblPlants:AT3G14220EnsemblPlants:AT3G14220.1entrez:820640Gene3D:3.40.50.1110GeneID:820640Genevisible:Q9LJP2
GO:GO:0005576GO:GO:0005773GO:GO:0016042GO:GO:0016788Gramene:AT3G14220.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF266
HOGENOM:HOG000237649InParanoid:Q9LJP2IntAct:Q9LJP2InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT3G14220OMA:HNTEKTD
PaxDb:Q9LJP2Pfam:PF00657Pfam:Q9LJP2PhylomeDB:Q9LJP2PRIDE:Q9LJP2PRO:PR:Q9LJP2ProteinModelPortal:Q9LJP2
Proteomes:UP000006548RefSeq:NP_188038.2STRING:3702.AT3G14220.1TAIR:AT3G14220TMHMM:TMhelixUniGene:At.5568UniProt:Q9LJP2
Coordinates (TAIR10) chr3:+:4733039..4734483
Molecular Weight (calculated) 40250.80 Da
IEP (calculated) 6.85
GRAVY (calculated) -0.19
Length 363 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKNRNLVFF LGVLASFTLS SFPVTVSGEP PILFTFGDSS YDVGNTKFFS SEFDPATTWP YGDSIDDPSG RWSDGHIVPD FVGRLIGHRE PIPPVLDPKA
101: DLSRGASFAI AGAVVLGSQS TTASMNFGQQ ISKFLELHKQ WTDKERAEAI YMVNIGAEDY LNFAKAHPNA NTVEQLTQVA HVLQRIPREL TSLYRAGGAR
201: KFAVQNLGPL GCLPIVRQEF KTGENCMEMV NFMVKTHNER LSRLLVAITV PLLYRGFRYS LFDFNGEILR RINEPSLHGY TDTTTSCCGT GSRNAYGCGY
301: SNVHAKLCSY QKSFLFFDGR HNTEKTDEEV ANLFYSGDKH VVSPMNIKDL VGKAATDLLA QEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)