AT3G14120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: nuclear pore; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Nuclear pore protein 84/107 (InterPro:IPR007252); Has 5399 Blast hits to 5001 proteins in 612 species: Archae - 19; Bacteria - 730; Metazoa - 2186; Fungi - 823; Plants - 382; Viruses - 37; Other Eukaryotes - 1222 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:4677993..4685455 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 125334.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.72 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.30 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1101 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDMDMDTSPS YFDPEALSVR DQFRRYRKRH STSPHEEMLS SNVSENRLLY DGHNIHSPTN TALLLENIKE EVDNFHTDHY EGTPTNPISA SRRESVGILN 0101: DDDEALFRRV ESQSLKACKI ENDELAESGD TTFALFASLF DSALQGLMSI PNLMLRLEES CRNVSQSIRY GSDIRHRAVE DKLMRQKAQL LLGEAASWSL 0201: LWNLYGKGTD EVPENLILIP STSHLEACQF VLNDHTAQLC LRIVMWLEEL ASKSLDLERK VQGSHVGTYL PNAGVWHHTQ RYLKKNGSNA DTLHHLDFDA 0301: PTREHARLLP DDYKQDESVL EDVWTLIRAG RIEEACDLCR SAGQSWRAAT LCPFSGMDMF PSIEALVKNG ENRTLQAIEQ ESGFGNQLRL WKWASYCASE 0401: KIAEQDGGKH EVAVFATQCS NLNRMLPICT DWESACWAMA KSWLDVQVDL ELAQSKPGLT ERFKSCIDES PEATQNGCQA SFGPEDWPLH VLNQQPRDLP 0501: ALLQKLHSGE MVHEAVVRGC KEQHRQIQMN LMLGDISHLL DIIWSWIAPL EDDQSNFRPH GDPHMIKFGA HMVLVLRLLF TDEINDSFKE KLNNVGDLIL 0601: HMYAMFLFSK QHEELVGIYA SQLARHRCIE LFVHMMELRM HSSVHVKYKI FLSAMEYLSF SPVDDLHGNF EEIVDRVLSR SREIKLAKYD PSIDVAEQHR 0701: QQSLQKAIAI QWLCFTPPST IKDVKDVTSK LLLRSLMHSN ILFREFALIA MWRVPATPVG AHTLLSYLAE PLKQLSENPD TLEDYVSENL QEFQDWNEYY 0801: SCDAKYRNWL KFQLENAEVT ELSEEENQKA VVAAKETLDS SLSLLLRQDN PWMTFLEDHV FESEEYLFLE LHATAMLCLP SGECLRPDAT VCAALMSALY 0901: SSVSEEVVLD RQLMVNVSIS SRDSYCIEVV LRCLAIKGDG LGPHNANDGG ILSAVAAAGF KGSDIYGTYF SFTYDLPPFS IEIWGCELTR FQAGVTMDIS 1001: RLDAWYSSKE GSLETPATYI VRGLCRRCCL PELVLRSMQV SVSLMESGNP PEDHDELIEL VASDETGFLS LFSRQQLQEF MLFEREYRMS QLELQEELSS 1101: P |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)