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AT3G14020.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear factor Y, subunit A6
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nuclear factor Y, subunit A6 (NF-YA6); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: CCAAT-binding factor complex, nucleus, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A5 (TAIR:AT1G54160.1); Has 683 Blast hits to 683 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 132; Plants - 380; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
BioGrid:5950eggNOG:COG5224eggNOG:KOG1561EMBL:AB019229
EMBL:AB493613EMBL:CP002686EnsemblPlants:AT3G14020EnsemblPlants:AT3G14020.1
entrez:820616GeneID:820616Genevisible:Q9LVJ7GO:GO:0003677
GO:GO:0003700GO:GO:0006351GO:GO:0009793GO:GO:0010262
GO:GO:0016602GO:GO:0048316Gramene:AT3G14020.1hmmpanther:PTHR12632
hmmpanther:PTHR12632:SF12HOGENOM:HOG000239782InParanoid:Q9LVJ7InterPro:IPR001289
InterPro:IPR018362KEGG:ath:AT3G14020KO:K08064OMA:ENPIGSH
PANTHER:PTHR12632PaxDb:Q9LVJ7Pfam:PF02045Pfam:Q9LVJ7
Pfscan:PS51152PhylomeDB:Q9LVJ7PRIDE:Q9LVJ7PRINTS:PR00616
PRO:PR:Q9LVJ7PROSITE:PS00686PROSITE:PS51152ProteinModelPortal:Q9LVJ7
Proteomes:UP000006548Reactome:R-ATH-2426168RefSeq:NP_188018.1scanprosite:PS00686
SMART:SM00521SMR:Q9LVJ7STRING:3702.AT3G14020.1TAIR:AT3G14020
tair10-symbols:NF-YA6UniGene:At.53304UniProt:Q9LVJ7
Coordinates (TAIR10) chr3:+:4642968..4644301
Molecular Weight (calculated) 34435.40 Da
IEP (calculated) 9.95
GRAVY (calculated) -0.68
Length 308 amino acids
Sequence (TAIR10)
(BLAST)
001: MQEFHSSKDS LPCPATSWDN SVFTNSNVQG SSSLTDNNTL SLTMEMKQTG FQMQHYDSSS TQSTGGESYS EVASLSEPTN RYGHNIVVTH LSGYKENPEN
101: PIGSHSISKV SQDSVVLPIE AASWPLHGNV TPHFNGFLSF PYASQHTVQH PQIRGLVPSR MPLPHNIPEN EPIFVNAKQY QAILRRRERR AKLEAQNKLI
201: KVRKPYLHES RHLHALKRVR GSGGRFLNTK KHQESNSSLS PPFLIPPHVF KNSPGKFRQM DISRGGVVSS VSTTSCSDIT GNNNDMFQQN PQFRFSGYPS
301: NHHVSVLM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)