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AT3G13980.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G54200.1); Has 1485 Blast hits to 418 proteins in 98 species: Archae - 0; Bacteria - 6; Metazoa - 246; Fungi - 61; Plants - 107; Viruses - 6; Other Eukaryotes - 1059 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3V9eggNOG:ENOG410YYWKEMBL:AB019229EMBL:CP002686EnsemblPlants:AT3G13980EnsemblPlants:AT3G13980.1entrez:820612
GeneID:820612Genevisible:Q9LVK2GO:GO:0005886GO:GO:0009734GO:GO:0010929GO:GO:0060918Gramene:AT3G13980.1
hmmpanther:PTHR33541hmmpanther:PTHR33541:SF5HOGENOM:HOG000243422KEGG:ath:AT3G13980OMA:YETTRLDPaxDb:Q9LVK2PhylomeDB:Q9LVK2
Proteomes:UP000006548RefSeq:NP_188014.1TAIR:AT3G13980UniGene:At.64115UniProt:Q9LVK2
Coordinates (TAIR10) chr3:-:4619189..4620262
Molecular Weight (calculated) 40078.50 Da
IEP (calculated) 9.86
GRAVY (calculated) -0.90
Length 357 amino acids
Sequence (TAIR10)
(BLAST)
001: MEITWEKPKS SSHHRNPSFS STLLDQIYRS IDDSSPPPPL ESIKKKKHHH QQRNASLHED REISPIYHRR SIAADFERSR RKTDFLRHSN SSSSDSSGFS
101: SSESDSFHGR SKSSASPPSS SRQQPKPIRT SSVDHSSAVQ KPKELGGFLR TKSKALKIYS DLKKVKQPIS PGGRLATFLN SLFTNAATNP KKHKKTTTVA
201: VVEEPHSSST CSSASSFSRS CLSKTPSSSG KSKRSVRFCP VNVILDEDSS FTMPYAYNNE RLYDNNEAKR VEEHRRVIQA AKDLLRTYHN KNKVTTTNIN
301: NVEEDDEDDA ASCASSDLFE LENLSAIGIE RYREELPVYE TTRLDNMNRV IATGLIV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)